AT1G21060.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
|||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function, DUF547 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G76620.1); Has 536 Blast hits to 524 proteins in 67 species: Archae - 0; Bacteria - 34; Metazoa - 26; Fungi - 3; Plants - 441; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:7371799..7374085 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56744.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.03 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||
| Length | 505 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGLCSPSPS SHDCSSSSPR NSEKKQNVIV ASPSRFSTYT KPSLSIEKRL LTYQDSNCNV TPKSSEDLRK EIASLEFEIL RTEQYLLSLY RTAFDEQVSS 101: FSPHTETSLV SNQFLPKSEQ SDVTSVFSYH YQASPASECS SLCPPRSFQA SLKALSAREK SRYVSSSHTT LGDLLGSTLI VDNIANPSRL SEDILRCICS 201: VYCTLSSKAR INSCLQASPS SPSSVSSKAT FDSLNSRHEE RKEANVPGVV VIESLELHLD DGSFNHAAVM LQNFRSLVQK LEKVDPSRMK REEKLAFWIN 301: IHNALTMHAY LAYGTHNRAR NTSVLKAAYD VGGYSVNPYI IQSSILGIRP HFSQPLLQTL FSPSRKSKTC NVKHIYALEY PEALAHFALS SGFSTDPPVR 401: VYTADCVFRD LRKSKEEFIR NNVRIHNETK ILLPKIVHYY AKDMSLEPSA LMETTVKCLP DSTKRTAQKL LKKKSRNIEY SPENSSFRYV IIQEPTTRRH 501: DSTII |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)