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AT1G20060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ATP binding microtubule motor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60930.1); Has 10625 Blast hits to 10139 proteins in 419 species: Archae - 2; Bacteria - 255; Metazoa - 4769; Fungi - 1373; Plants - 1690; Viruses - 3; Other Eukaryotes - 2533 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0242EMBL:AC022472EMBL:CP002684
EnsemblPlants:AT1G20060EnsemblPlants:AT1G20060.1entrez:838594Gene3D:3.40.850.10
GeneID:838594GO:GO:0003777GO:GO:0005524GO:GO:0005874
GO:GO:0007018Gramene:AT1G20060.1hmmpanther:PTHR24115hmmpanther:PTHR24115:SF480
InParanoid:F4HR11InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417
InterPro:IPR027640iPTMnet:F4HR11KEGG:ath:AT1G20060ncoils:Coil
OMA:SCNLIKAPANTHER:PTHR24115PaxDb:F4HR11Pfam:PF00225
Pfscan:PS50067PIR:A86334PRIDE:F4HR11PRINTS:PR00380
PROSITE:PS00411PROSITE:PS50067ProteinModelPortal:F4HR11Proteomes:UP000006548
RefSeq:NP_173434.4scanprosite:PS00411SMART:SM00129SMR:F4HR11
STRING:3702.AT1G20060.1SUPFAM:SSF52540TAIR:AT1G20060UniGene:At.49896
UniProt:F4HR11
Coordinates (TAIR10) chr1:-:6950723..6956293
Molecular Weight (calculated) 108160.00 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.72
Length 970 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKQKSLSP PPCPSTVTVR RNPPRRARAT PFTTTTKPPL SSLACAKPHD VPTFPIDEIL SIQIPQSEPK PAIAESLKIF LRIKPLRTFT KVTTTTKSRP
101: RNVWPQNPSK KNNAKENRNP EITKKVRKKD EEACITLNDS YSVTLTPPQS LQELKRSKTE VYEGFSHVFP ADCSQNDVYD KMVQPLLEDF MKGKSGMLAA
201: LGPSGSGKTH TVFGSLKDPG IVPITLRQIF KKNDESCSGS LRSFNLSIFE ICSERGKGEK AYDLLGGESS ELSVQQSTIR GLKEVPIQNL EEAESLIGQA
301: MLKRATATTN SNSQSSRSQC IINIRASCNG FSNETKLQSS DAMLTIVDLA GAEREKRTGN QAIDFGLPGT DPYFILFLMP TIPLTMNTRY LLAVTVGVPE
401: EPKEGIAETS SKFFGSLTRY LRDYLEGKKR MALILTVKAG EEDYLDTSYL LRQASPYMKI KFDNTEEPCN KRQLKTFPRA EKNKKIKLSA PKTSQIEENF
501: QGERCQISQE VNLQGKKADP TDRSSPRLEH VAQDKNEREH IIMRNFSKVL WNVLKQCNEK LKVAEGEIFT LKDSLRREQL KSLGLETELI SLKSSCLAQP
601: CIPEVEVIVN AKEHFEVDAA LTNERNVDDD SCNLIKARRE AGAEESSETP VPKVRNVDDD SCNLIKARRE AGAEESSESP VLSVLRNVDD DSCNLIEARR
701: EAGSEESSKS PVPNVRNVDV DSCNLINPRR EASTEESSES PVLSKNVKDA ELVPCHLSSE NDAEPRQSVN SEENVGIPST ITHVEAEVTD FQRDQNQDDP
801: TPSPEQVEVS QDCINSGLSN VQTKSAISRR FPDSEKQERN RRLLPASSRS LTEEMNDLEI KDIQTEKQQV KTTNTRVQKK AVSIQGQETE VPPREAEPAS
901: TKKQKNGQKP KRRLQPASSV LLTREINTLE IEDDIAEPKV NRGGKKTTVS QPRSQGSVTL LRLLTNNLHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)