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AT1G18180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1295)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G73650.3); Has 2065 Blast hits to 2065 proteins in 348 species: Archae - 0; Bacteria - 501; Metazoa - 79; Fungi - 152; Plants - 110; Viruses - 0; Other Eukaryotes - 1223 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3752eggNOG:KOG4650EMBL:CP002684EnsemblPlants:AT1G18180
EnsemblPlants:AT1G18180.1entrez:838397GeneID:838397GO:GO:0005737
GO:GO:0005886GO:GO:0006629GO:GO:0016021GO:GO:0016627
Gramene:AT1G18180.1hmmpanther:PTHR32251hmmpanther:PTHR32251:SF15InParanoid:F4IAN4
InterPro:IPR001104InterPro:IPR010721KEGG:ath:AT1G18180OMA:IFWILQA
PaxDb:F4IAN4Pfam:PF06966Pfscan:PS50244PRIDE:F4IAN4
PROSITE:PS50244ProteinModelPortal:F4IAN4Proteomes:UP000006548RefSeq:NP_173256.2
STRING:3702.AT1G18180.1TAIR:AT1G18180TMHMM:TMhelixUniGene:At.42983
UniGene:At.51660UniProt:F4IAN4
Coordinates (TAIR10) chr1:+:6255903..6257737
Molecular Weight (calculated) 35201.40 Da
IEP (calculated) 9.82
GRAVY (calculated) 0.34
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKVIDSHYL AITAIVTVGY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLLLKGTWH YRQIVLTVLV VVWGLRLGLF LLMRILQWGE DRRFDDMREN
101: IGKLVVFWIF QAVWVWTVSL PVTFVNASNG GRLFQPADVI GWTMWVAGFL IEATADQQKL SFKKCPENKG KWCDVGVWKY SRHPNYFGEM LLWWGLYVAS
201: LPVLKGLEYL VIIGPVFLTL LLLFVSGIPL LEESADKKYG NLGAYRHYKK TTSPLILLPR GVYGYLPIWC KSVFLFEFPL YSRNLPQETT AWDRRNSKKS
301: QRSID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)