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AT5G17780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G17720.1); Has 7857 Blast hits to 7854 proteins in 1332 species: Archae - 48; Bacteria - 4836; Metazoa - 288; Fungi - 267; Plants - 239; Viruses - 3; Other Eukaryotes - 2176 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0596eggNOG:KOG1454EMBL:AJ630490EMBL:AY568662
EMBL:CP002688EnsemblPlants:AT5G17780EnsemblPlants:AT5G17780.1entrez:831646
ESTHER:arath-Q9FN74ExpressionAtlas:Q700D5Gene3D:3.40.50.1820GeneID:831646
GO:GO:0016787Gramene:AT5G17780.1hmmpanther:PTHR10992hmmpanther:PTHR10992:SF881
HOGENOM:HOG000243550InterPro:IPR000073InterPro:IPR029058merops:S33.A73
Pfam:PF00561PhylomeDB:Q700D5PRINTS:PR00111Proteomes:UP000006548
RefSeq:NP_197280.2SMR:Q700D5STRING:3702.AT5G17780.2SUPFAM:SSF53474
TAIR:AT5G17780TMHMM:TMhelixUniGene:At.50465UniProt:Q700D5
Coordinates (TAIR10) chr5:-:5867429..5868976
Molecular Weight (calculated) 47458.00 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.15
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MSFPRKFGTA IHAALSFIVF FFLDLLDAIL CVVYEFVDEI LEENSTGCYC TAAAPQSQTT DENELSSETL FGRRNIFRGM WFLGFAREFK SKLSRKLRKS
101: KIHQESVNRW SDCGCKSCKS WTKNEDGNLH VVVKDSTSRE YSVQEPSENV IFIHGFMGSS HFWTETVFEH IQKDDYRLLA IDLLGFGESP KPRDSLYTLK
201: DHVDTIERSV IKPYQLDSFH VVAHSMGCLI ALALAAKHSN IVKSVTLVAP PYFPSSVEGS VLNRIARKRL WPPLAFGTAV MSWYEHIGRC VCFIICKHHK
301: IWEWLIKLCI GKREIHWKIK DITRHTHHSA WHSMHNVICG GSKVADEHLE TLIKSGVKIH LMQGDCDQIV PSHCSGNMKR TFPAVEVDII TGADHDSMIS
401: GRGEEFAEKL ESIWCSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)