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AT1G18140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : laccase 1
Curator
Summary (TAIR10)
putative laccase, a member of laccase family of genes (with 17 members in Arabidopsis).
Computational
Description (TAIR10)
laccase 1 (LAC1); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 17 (TAIR:AT5G60020.1); Has 10262 Blast hits to 8380 proteins in 1481 species: Archae - 46; Bacteria - 4149; Metazoa - 461; Fungi - 3664; Plants - 1564; Viruses - 0; Other Eukaryotes - 378 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G18140-MONOMEREC:1.10.3.2eggNOG:COG2132eggNOG:KOG1263
EMBL:AC034107EMBL:AC069551EMBL:AK227320EMBL:CP002684
EnsemblPlants:AT1G18140EnsemblPlants:AT1G18140.1entrez:838393Gene3D:2.60.40.420
GeneID:838393Genevisible:Q9LMS3GO:GO:0005507GO:GO:0009809
GO:GO:0016722GO:GO:0046274GO:GO:0048046GO:GO:0052716
Gramene:AT1G18140.1hmmpanther:PTHR11709hmmpanther:PTHR11709:SF83HOGENOM:HOG000241916
InParanoid:Q9LMS3InterPro:IPR001117InterPro:IPR002355InterPro:IPR008972
InterPro:IPR011706InterPro:IPR011707InterPro:IPR017761InterPro:IPR033138
KEGG:ath:AT1G18140KO:K05909OMA:WAAIRINPaxDb:Q9LMS3
Pfam:PF00394Pfam:PF07731Pfam:PF07732Pfam:Q9LMS3
PhylomeDB:Q9LMS3PIR:E86316PRIDE:Q9LMS3PRO:PR:Q9LMS3
PROSITE:PS00079PROSITE:PS00080ProteinModelPortal:Q9LMS3Proteomes:UP000006548
RefSeq:NP_173252.2scanprosite:PS00079scanprosite:PS00080SMR:Q9LMS3
STRING:3702.AT1G18140.1SUPFAM:SSF49503TAIR:AT1G18140tair10-symbols:ATLAC1
tair10-symbols:LAC1TIGRfam:TIGR03389TIGRFAMs:TIGR03389TMHMM:TMhelix
UniGene:At.41805UniProt:Q9LMS3
Coordinates (TAIR10) chr1:-:6238986..6241393
Molecular Weight (calculated) 65232.10 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.23
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLGFLIIS TFLLLFTTLL PYSSASTTRR FHFNVEWKKV TRLCHTKQLL TVNGQYPGPT VAVHEGDIVE IKVTNRIAHN TTIHWHGLRQ YRTGWADGPA
101: YITQCPIRSK QSYTYRFKVE DQRGTLLWHA HHSWQRASVY GAFIIYPRQP YPFSGSHIQS EIPIILGEWW NDDVDNVEKA MMKTGAGAKV SDAYTLNGLP
201: GPLYPCSTKD TFTATVDAGK TYILRIINAA LNNELFVAVA NHTLTVVEVD AVYTKPVHTK AIMIAPGQTT TLLLRADQLS GGEFLIAATP YVTSVFPFNN
301: STTVGFIRYT GKTKPENSVN TRRRRRLTAM STVVALPNML DTKFATKFSD SIKSLGSAKY PCKVPTKIDK RVITTISLNL QDCPLNQTCD GYAGKRFFAS
401: MNNISFVRPP ISILESYYKK QSKGVFSLDF PEKPPNRFDF TGVDPVSENM NTEFGTKLFE VEFGSRLEIV FQGTSFLNIE NHPLHVHGHN FFVVGRGFGN
501: FDPEKDPKRY NLVDPPERNT FAVPTGGWAA IRINADNPGV WFIHCHLEQH TSWGLAMGFI VKDGPLPSQT LLPPPHDLPQ C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)