AT1G16370.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : organic cation/carnitine transporter 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
organic cation/carnitine transporter 6 (OCT6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter5 (TAIR:AT1G79410.1); Has 15766 Blast hits to 15675 proteins in 1589 species: Archae - 347; Bacteria - 7462; Metazoa - 3764; Fungi - 2418; Plants - 1153; Viruses - 0; Other Eukaryotes - 622 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:5596762..5598327 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 58354.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 521 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MADPISEPLL SHLTDDSGVN EKTRLEALTF DKIVEQSLSD FGFWQFFQIS LVGLALLFDA QQIFITVYTD AYPTWHCLNH TICDPSASDI CKLPRSAWEW 101: DGGSQGKSVI SEFGLECSSS LLRGMPSSAF YIGAIVGGFF LALIPDDSLG RKKLVLFSTF AMSITSISVI FSTNVWIYTF LKFIIGFSRS QTWSYALVLI 201: SERVSTRWRP RATMIPFTLF VLGFMSLSGI AFLAQDSSWR YLYLYTSVPA VFYCIFLYLF ALESPRWLHM QGKDKEAIDV LTKMSPKEKA YLESVVSKLP 301: LKQENFEQAP TYSIKDFFFR KWAFRRILVV MIIMFGLGIS YYGVPLAARD IDVNIYLSET LNALVELPTF VITPILLERF NRRSSVLVNT LLGGASGVLC 401: FVLSILGKTE IAFAFELGTF FCARIGFNLM AVFMVEMFPT CVRSSATMMF RQALVVGGAC CPLIASIGRY IPSVSFAIFG IAMSGLGMFV LILPETKGLS 501: LCDSMEEQEK RDQAVNTSHV C |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)