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AT1G14685.3
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic pentacysteine 2
Curator
Summary (TAIR10)
Arabidopsis GBP Basic Penta Cysteine 1
Computational
Description (TAIR10)
basic pentacysteine 2 (BPC2); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine1 (TAIR:AT2G01930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVD8eggNOG:ENOG410YBIVEMBL:AC006917EMBL:AC010657
EMBL:AY058073EMBL:AY090305EMBL:AY380568EMBL:CP002684
EMBL:DQ307036EMBL:DQ307037EnsemblPlants:AT1G14685EnsemblPlants:AT1G14685.1
EnsemblPlants:AT1G14685.2EnsemblPlants:AT1G14685.3entrez:838031GeneID:838031
Genevisible:Q9LDE2GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0009723GO:GO:0050793Gramene:AT1G14685.1
Gramene:AT1G14685.2Gramene:AT1G14685.3hmmpanther:PTHR31421hmmpanther:PTHR31421:SF0
HOGENOM:HOG000241671InParanoid:Q9LDE2InterPro:IPR010409KEGG:ath:AT1G14685
OMA:YNWINQQPANTHER:PTHR31421PaxDb:Q9LDE2Pfam:PF06217
Pfam:Q9LDE2PhylomeDB:Q9LDE2PRIDE:Q9LDE2PRO:PR:Q9LDE2
Proteomes:UP000006548RefSeq:NP_563955.1RefSeq:NP_849662.1RefSeq:NP_973828.1
SMART:SM01226STRING:3702.AT1G14685.1TAIR:AT1G14685tair10-symbols:ATBPC2
tair10-symbols:BBR/BPC2tair10-symbols:BPC2UniGene:At.15024UniProt:Q9LDE2
Coordinates (TAIR10) chr1:+:5043086..5043925
Molecular Weight (calculated) 31170.20 Da
IEP (calculated) 10.27
GRAVY (calculated) -0.78
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMMGP NGSYHHQEPP IHMSYNWINQ QKDKFFNMLP VTTATPNYGN VLPETSSAPS
101: MQMNLHHHLQ TEENPVKLEE EIVVQTKKRK TNAKAGSTPK AKKPRKPKDE NSNNNNNNNT NVTRVKPAKK SVDLVINGVS MDISGLPVPI CTCTGAPQQC
201: YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ GAFKKVLEKL ASDGFNFGNP IDLKSHWARH GTNKFVTIR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)