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AT1G14210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease T2 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease T2 family protein; FUNCTIONS IN: ribonuclease T2 activity, endoribonuclease activity, RNA binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2321 Blast hits to 2320 proteins in 411 species: Archae - 0; Bacteria - 245; Metazoa - 291; Fungi - 229; Plants - 1455; Viruses - 6; Other Eukaryotes - 95 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111M7GeggNOG:KOG1642EMBL:CP002684EnsemblPlants:AT1G14210
EnsemblPlants:AT1G14210.1entrez:837982Gene3D:3.90.730.10GeneID:837982
GO:GO:0003723GO:GO:0009651GO:GO:0033897Gramene:AT1G14210.1
hmmpanther:PTHR11240hmmpanther:PTHR11240:SF19InParanoid:F4HUG9InterPro:IPR001568
InterPro:IPR018188InterPro:IPR033130KEGG:ath:AT1G14210KO:K01166
OMA:AKEFVECPANTHER:PTHR11240PaxDb:F4HUG9Pfam:PF00445
PRIDE:F4HUG9PROSITE:PS00530PROSITE:PS00531ProteinModelPortal:F4HUG9
Proteomes:UP000006548RefSeq:NP_563940.1scanprosite:PS00530scanprosite:PS00531
SMR:F4HUG9STRING:3702.AT1G14210.1SUPFAM:SSF55895TAIR:AT1G14210
UniGene:At.22450UniProt:F4HUG9
Coordinates (TAIR10) chr1:-:4856902..4857941
Molecular Weight (calculated) 28187.50 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.23
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGIIIVSLL ILQSLVVSSS QTEPDFNFFY WVNYWPGAIC DSQKGCCPPT KGNTASDFII HGLWPQFNNG TWPAFCDQTN LFDISKISDL VCQMEKKWTE
101: WGVWACPSNE TNLWEHEWNK HGTCVQSIFD QHSYFRTNLK FKHKVHLLNI LIQKGIKPND GFYSLDEIKN AIKCAIGFAP GIECNEDVKG NKQLFQIYIC
201: LDNYAKEFVE CPYVPDKSCA SKIKFPSLPE RDSLNESLSV MSSVSTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)