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AT1G13970.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1336)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1336); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT3G29180.2); Has 292 Blast hits to 292 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 248; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGM5eggNOG:ENOG4111ZZYEMBL:AC007576EMBL:BT004293
EMBL:BT005621EMBL:CP002684EnsemblPlants:AT1G13970EnsemblPlants:AT1G13970.1
entrez:837957GeneID:837957Gramene:AT1G13970.1hmmpanther:PTHR31558
hmmpanther:PTHR31558:SF1HOGENOM:HOG000240431InterPro:IPR009769KEGG:ath:AT1G13970
OMA:EYVHLDFPfam:PF07059PhylomeDB:Q9XI89PIR:H86272
Proteomes:UP000006548RefSeq:NP_172850.2TAIR:AT1G13970UniGene:At.41998
UniProt:Q9XI89
Coordinates (TAIR10) chr1:-:4779742..4781882
Molecular Weight (calculated) 57596.30 Da
IEP (calculated) 8.28
GRAVY (calculated) -0.65
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGCVSSQRK LSNKLQQKKQ KRGRSGKCRS KISASMPDVP MKRMSNASVR DFAVSEYVHL DFDNCAAKMM CKRAEMSNAN FHLTQLQWNC SQIDGNRISH
101: EEAWYDSFSY IDSDSDDGSN SSVFEDANAS AMGQVIQYEE FYESYLKIDG NKGETYSSKN EVSIKRNQVA DESHHETFKT TTCEDHQDHR KKSSKVVMVS
201: VRRTSIDSKS TPSEFSSAEK LLYRPKAGSM IQRSLGEKMT SQGSWSEVSP SSFKLRGLNF FRDKQKCPAP NCSPYIPIGV DLFACPKKIN HIAQHIELPN
301: LKPASSQVCD IPNLLIVNIQ LPMYPTSMFG DYDGEGLSLV LYFKRNENYH KEISSHFKET IKRFMEDEME KVKGFTREST VPFRERLKIM AGLVNPEDFQ
401: LSSTERKLIT AYNDRPVLSR PQHDFFQGPN YFEIDLDIHR FSYISRKGLE SFRDRIKNGI LDLGLTIQAQ SPEELPEQVL CCVRLNKIDF VNHGQIPTLL
501: TNKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)