AT1G13300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb-like transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Overexpression confers hypersensitivity to low phosphate-elicited inhibition of primary root growth. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 (HRS1); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT3G25790.1); Has 1648 Blast hits to 1627 proteins in 64 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 2; Plants - 1613; Viruses - 8; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4556977..4558591 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39059.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.08 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 344 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKKFSNMDY NQKRERCGQY IEALEEERRK IHVFQRELPL CLDLVTQAIE ACKRELPEMT TENMYGQPEC SEQTTGECGP VLEQFLTIKD SSTSNEEEDE 101: EFDDEHGNHD PDNDSEDKNT KSDWLKSVQL WNQPDHPLLP KEERLQQETM TRDESMRKDP MVNGGEGRKR EAEKDGGGGR KQRRCWSSQL HRRFLNALQH 201: LGGPHVATPK QIREFMKVDG LTNDEVKSHL QKYRLHTRRP RQTVPNNGNS QTQHFVVVGG LWVPQSDYST GKTTGGATTS STTTTTGIYG TMAAPPPPQW 301: PSHSNYRPSI IVDEGSGSHS EGVVVRCSSP AMSSSTRNHY VKNN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)