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AT1G12950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.538
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 2 (RSH2); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, root hair, root; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9730 Blast hits to 9684 proteins in 1960 species: Archae - 180; Bacteria - 6829; Metazoa - 143; Fungi - 326; Plants - 1351; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC012187EMBL:AK227815
EMBL:BT023437EMBL:CP002684EnsemblPlants:AT1G12950EnsemblPlants:AT1G12950.1
entrez:837853GeneID:837853Genevisible:Q9LPV4GO:GO:0006855
GO:GO:0015238GO:GO:0015297GO:GO:0016021GO:GO:0048767
Gramene:AT1G12950.1hmmpanther:PTHR11206hmmpanther:PTHR11206:SF79HOGENOM:HOG000177025
InParanoid:Q9LPV4InterPro:IPR002528KEGG:ath:AT1G12950KO:K03327
OMA:NLWGFVKPaxDb:Q9LPV4Pfam:PF01554PhylomeDB:Q9LPV4
PIR:D86263PRIDE:Q9LPV4ProMEX:Q9LPV4ProteinModelPortal:Q9LPV4
Proteomes:UP000006548RefSeq:NP_172755.1SMR:Q9LPV4STRING:3702.AT1G12950.1
TAIR:AT1G12950tair10-symbols:RSH2TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.42053UniProt:Q9LPV4
Coordinates (TAIR10) chr1:+:4419849..4422462
Molecular Weight (calculated) 56909.10 Da
IEP (calculated) 5.23
GRAVY (calculated) 0.74
Length 522 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKDNDFKDP FLASTEEEEL DPATQKALME YLGVGSRASS LVSFSSTAVD IPPISGVGDF VREFRIESRK LWKLAGPAIF TTMSQYSLGA VTQVFAGHIS
101: TLALAAVSIE NSVIAGFSFG IMLGMGSALE TLCGQAFGAG KVSMLGVYLQ RSWVILSVTA LFLSLIYIFA APILTFIGQT AAISAMAGIF SIYMIPQIFA
201: YAINFPTAKF LQSQSKIMVM AGISGVVLVI HSFFTWLVMS RLHWGLPGLA LVLNTSWWVI VVAQLVYIFN CTCGEAWSGF TWEAFHNLWG FVKLSLASAA
301: MLCLEIWYFM ALVLFAGYLK NAEVSVAALS ICMNILGWAA MVAFGTNAAV SVRVSNELGA SHPRTAKFSL VVAVILSTAI GMFIAAGLLF FRNEYPVLFV
401: EDEEVRNVVR ELTPMLAFCI VINNVQPVLS GVAVGAGWQA VVAYVNIACY YLFGVPFGLL LGFKLEYGVM GIWWGMVTGT FVQSIVLTWM ICKTNWEKEA
501: SMAEERIKEW GGVPAEKETL LN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)