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AT1G12880.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.912
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 12 (NUDT12); FUNCTIONS IN: hydrolase activity; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 13 (TAIR:AT3G26690.2); Has 1294 Blast hits to 1293 proteins in 373 species: Archae - 0; Bacteria - 562; Metazoa - 265; Fungi - 111; Plants - 235; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G12880-MONOMEREC:3.6.1.-eggNOG:COG0494eggNOG:KOG2839
EMBL:AC012187EMBL:AY056178EMBL:AY091264EMBL:CP002684
EnsemblPlants:AT1G12880EnsemblPlants:AT1G12880.1entrez:837845Gene3D:3.90.79.10
GeneID:837845Genevisible:Q93ZY7GO:GO:0005739GO:GO:0016787
GO:GO:0046872Gramene:AT1G12880.1hmmpanther:PTHR12629hmmpanther:PTHR12629:SF11
HOGENOM:HOG000165198InParanoid:Q93ZY7InterPro:IPR000086InterPro:IPR015797
InterPro:IPR020084KEGG:ath:AT1G12880OMA:NEEDECFPaxDb:Q93ZY7
Pfam:PF00293Pfam:Q93ZY7Pfscan:PS51462PhylomeDB:Q93ZY7
PIR:E86262PRIDE:Q93ZY7PRO:PR:Q93ZY7PROSITE:PS00893
PROSITE:PS51462ProteinModelPortal:Q93ZY7Proteomes:UP000006548RefSeq:NP_563919.1
scanprosite:PS00893SMR:Q93ZY7STRING:3702.AT1G12880.1SUPFAM:SSF55811
TAIR:AT1G12880tair10-symbols:atnudt12tair10-symbols:NUDT12UniGene:At.26364
UniProt:Q93ZY7
Coordinates (TAIR10) chr1:+:4390036..4391046
Molecular Weight (calculated) 23870.10 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.71
Length 203 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVLSSRTGR DRQRYDNNFR LVSGCIPYRL MKADETEEDS GVDFVNKLEV LMVSSPNRHD LVFPKGGWED DETVLEAASR EAIEEAGVKG ILRELPLGVW
101: EFRSKSSTVE DECLGGCKGY MFALKVTEEL EDWPERKNRE RRWLTVKEAL ELCRYEWMQR ALEEFLRVME DERRLRTEEE TVHDSSKLEE ESQIDPWYCF
201: VVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)