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AT1G08730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Myosin family protein with Dil domain
Curator
Summary (TAIR10)
Class XI myosin gene
Computational
Description (TAIR10)
XIC; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784; Bacteria - 7621; Metazoa - 29049; Fungi - 4176; Plants - 2435; Viruses - 163; Other Eukaryotes - 13339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5022eggNOG:KOG0160EMBL:AC003981EMBL:BX816587
EMBL:CP002684EnsemblPlants:AT1G08730EnsemblPlants:AT1G08730.1entrez:837394
Gene3D:3.40.50.300GeneID:837394Genevisible:F4HXP9GO:GO:0000146
GO:GO:0003774GO:GO:0005524GO:GO:0007015GO:GO:0009860
GO:GO:0016459GO:GO:0030048GO:GO:0051640Gramene:AT1G08730.1
hmmpanther:PTHR13140hmmpanther:PTHR13140:SF390InParanoid:F4HXP9InterPro:IPR000048
InterPro:IPR001609InterPro:IPR002710InterPro:IPR004009InterPro:IPR027417
iPTMnet:F4HXP9KEGG:ath:AT1G08730ncoils:CoilOMA:KIRTHIT
PaxDb:F4HXP9Pfam:F4HXP9Pfam:PF00063Pfam:PF00612
Pfam:PF01843Pfam:PF02736Pfscan:PS50096Pfscan:PS51126
Pfscan:PS51456PIR:T00727PRIDE:F4HXP9PRINTS:PR00193
PRO:PR:F4HXP9PROSITE:PS50096PROSITE:PS51126PROSITE:PS51456
ProteinModelPortal:F4HXP9Proteomes:UP000006548RefSeq:NP_172349.2SMART:SM00015
SMART:SM00242SMART:SM01132STRING:3702.AT1G08730.1SUPFAM:SSF52540
TAIR:AT1G08730tair10-symbols:ATXICtair10-symbols:XICUniGene:At.42257
UniProt:F4HXP9
Coordinates (TAIR10) chr1:+:2779963..2788325
Molecular Weight (calculated) 174635.00 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.40
Length 1538 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVRECFTFLN IFVLHSIGSH VWFEDPEVAW IDGEVEKING QEVVIQATTG KKVTAKLSKI YPKDVEAPAG GVDDMTKLSY LHEPGVLQNL KIRYELNEIY
0101: TYTGNILIAI NPFQRLPHIY DAHMMQQYKG APLGELSPHV FAVADVAYRA MINEGKSNSI LVSGESGAGK TETTKMLMRY LAYLGGRAVT EGRTVEQQVL
0201: ESNPVLEAFG NAKTVRNNNS SRFGKFVEIQ FDKQGRISGA AIRTYLLERS RVCQISDPER NYHCFYLLCA APQEEIEKYK LGHPKTFHYL NQSKCFELVG
0301: ISDAHDYLAT RRAMDIVGIS EKEQEAIFRV VAAILHIGNI DFTKGKEVDS SVPKDEKSKF HLKTAAELLM CDLKALEDAL CKRVMITPEE VIKRSLDPQS
0401: AVTSRDGLAK TVYSRLFDWL VDKINKSIGQ DANSRSLIGV LDIYGFESFK TNSFEQFCIN FTNEKLQQHF NQHVFKMEQE EYTKEAIDWS YIEFVDNQDV
0501: LDLIEKKPGG IVALLDEACM FPKSTHETFA NKLYQTFKTH KRFIKPKLSR TDFAVAHYAG EVLYQSELFL DKNKDYVIPE HQDLLGASKC PFVVGLFPPL
0601: PEETSKSSKF SSIGSRFKLQ LQQLMETLNC TEPHYIRCVK PNNLLKPAIF ENVNIMQQLR CGGVLEAIRI SCAGYPTRKP FFEFINRFGL LSPAALEGNF
0701: DEKVACQKIL DNMGLKGYQI GKTKVFLRAG QMAELDARRA EVLSSAAKKI QRRIRTHQAQ KRFIVLRKAT ISLQAICRGR LSCKHYDNLR REAAAVKIQK
0801: NGRRHYSRKS YKKLHVASLV VQTGLRAMAA RKQFRFRKQT KAATIVQAQW RCHRAISYYK KLKNGVVLSQ TRWRGRLAKR ELRKLKMAAR ETGALKEAKD
0901: MLEKKVEELT YRVQLEKRSR GDLEEAKTQE ILKLKSSFEE MRKKVDETNA LLLKEREAAK KAAEEAPPVI KETQILVEDT KKIELMTEEL ESVKVTLENE
1001: KQRADDAVRK FEEAQESLED KKKKLEETEK KGQQLQESLT RMEEKCSNLE SENKVLRQQA VSMAPNKFLS GRSRSILQRG SESGHLAVDA RSNLDLHSHS
1101: INHRDPSEVE DKPQKSLNEK QQENQDLLIR SIVQHLGFQG NRPITACIIY KCLLQWRSFE VERTSVFDRI IQTIGHAIET QDNNNTLAYW LSNTSTLLLL
1201: LQRTLKASGA AGMAPQRRRS SSATLFGRMS QSFRGAPPGV NLAMINGAAG GGADTFRQVE AKYPALLFKQ QLTAYVEKIY GMIRDNLKKE ISPLLGLCIQ
1301: APRTSRASLV KGASRSVGNT AAQQALIAHW QGIVKSLTNF LNTLKSNNVP SFLVRKVFTQ IFSFINVQLF NSLLLRRECC SFSNGEYVKA GLSELEHWCF
1401: KATNEYAGSS WDELKHIRQA IGFLVVHQKP KKTLDEISHD LCPVLSIQQL YRISTMYWDD KYGTHSVSPD VIANMRVLMT EDSNNAVSNS FLLDDDSSIP
1501: FSVDDLSKSM EKFEIADIEP PPLIRENSGF SFLLPVSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)