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AT1G07410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog A2B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog A2B (RABA2b); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: endosome, plasma membrane, cell plate; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), ADP-ribosylation factor (InterPro:IPR006688), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Rab11-related (InterPro:IPR015595), Small GTPase, Rho type (InterPro:IPR003578), Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A2D (TAIR:AT5G59150.1); Has 28965 Blast hits to 28914 proteins in 772 species: Archae - 29; Bacteria - 152; Metazoa - 15139; Fungi - 4328; Plants - 3313; Viruses - 20; Other Eukaryotes - 5984 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0087EMBL:AC022464EMBL:CP002684
EnsemblPlants:AT1G07410EnsemblPlants:AT1G07410.1entrez:837253Gene3D:3.40.50.300
GeneID:837253Genevisible:Q9LNW1GO:GO:0005525GO:GO:0005768
GO:GO:0005794GO:GO:0005886GO:GO:0007264GO:GO:0009504
GO:GO:0010008GO:GO:0015031GO:GO:0042546Gramene:AT1G07410.1
hmmpanther:PTHR24073hmmpanther:PTHR24073:SF484InParanoid:Q9LNW1InterPro:IPR001806
InterPro:IPR005225InterPro:IPR027417KEGG:ath:AT1G07410OMA:ANVKRGC
PaxDb:Q9LNW1Pfam:PF00071Pfam:Q9LNW1Pfscan:PS51419
PIR:A86209PRIDE:Q9LNW1PRO:PR:Q9LNW1PROSITE:PS51419
ProteinModelPortal:Q9LNW1Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_172221.1
SMR:Q9LNW1STRING:3702.AT1G07410.1SUPFAM:SSF52540TAIR:AT1G07410
tair10-symbols:ATRAB-A2Btair10-symbols:ATRABA2Btair10-symbols:RAB-A2Btair10-symbols:RABA2b
TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.51514UniProt:Q9LNW1
Coordinates (TAIR10) chr1:+:2276270..2277154
Molecular Weight (calculated) 23690.10 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.28
Length 214 amino acids
Sequence (TAIR10)
(BLAST)
001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)