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AT1G07390.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.752
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : receptor like protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 1 (RLP1); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 9 (TAIR:AT1G58190.2); Has 135653 Blast hits to 34187 proteins in 1325 species: Archae - 66; Bacteria - 11060; Metazoa - 39671; Fungi - 1897; Plants - 72882; Viruses - 44; Other Eukaryotes - 10033 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G07390
EnsemblPlants:AT1G07390.1entrez:837251ExpressionAtlas:F4HQM5Gene3D:3.80.10.10
GeneID:837251GO:GO:0016021Gramene:AT1G07390.1hmmpanther:PTHR27004
hmmpanther:PTHR27004:SF17InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210
InterPro:IPR025875InterPro:IPR032675PaxDb:F4HQM5Pfam:PF08263
Pfam:PF12799Pfam:PF13855Pfscan:PS51450PRIDE:F4HQM5
PROSITE:PS51450ProteinModelPortal:F4HQM5Proteomes:UP000006548RefSeq:NP_172219.5
SMART:SM00369SMR:F4HQM5STRING:3702.AT1G07390.3SUPFAM:SSF52047
SUPFAM:SSF52058TAIR:AT1G07390tair10-symbols:AtRLP1tair10-symbols:RLP1
TMHMM:TMhelixUniGene:At.51513UniProt:F4HQM5
Coordinates (TAIR10) chr1:+:2269893..2274654
Molecular Weight (calculated) 116223.00 Da
IEP (calculated) 6.33
GRAVY (calculated) -0.13
Length 1034 amino acids
Sequence (TAIR10)
(BLAST)
0001: MGLLQLKSYL KNLVDAEEEE EEGLSILKSW THHEGDCCRW ERVKCSDAIN GHVIGLSLDR LVPVAFESQT RSLNLSLLHS FPQLQSLNLS WNWFTNLSDH
0101: FLGFKSFGTL DKLTTLDFSH NMFDNSIVPF LNAATSIRSL HLESNYMEGV FPPQELSNMT NLRVLNLKDN SFSFLSSQGL TDFRDLEVLD LSFNGVNDSE
0201: ASHSLSTAKL KTLDLNFNPL SDFSQLKGLE SLQELQVLKL RGNKFNHTLS THVLKDLKML QELDLSDNGF TNLDHGRGLE IPTSLQVLDF KRNQLSLTHE
0301: GYLGICRLMK LRELDLSSNA LTSLPYCLGN LTHLRTLDLS NNQLNGNLSS FVSGLPSVLE YLSLLDNNFD GSFLFNSLVN QTRLTVFKLS SKVGVIQVQT
0401: ESSWAPLFQL KMLYLSNCSL GSTMLGFLVH QRDLCFVDLS HNKLTGTFPT WLVKNNTRLQ TILLSGNSLT KLQLPILVHG LQVLDISSNM IYDSIQEDIG
0501: MVFPNLRFMN FSSNHFQGTI PSSIGEMKSL QVLDMSSNGL YGQLPIMFLS GCYSLRVLKL SNNQLQGKIF SKHANLTGLV GLFLDGNNFT GSLEEGLLKS
0601: KNLTLLDISD NRFSGMLPLW IGRISRLSYL YMSGNQLKGP FPFLRQSPWV EVMDISHNSF SGSIPRNVNF PSLRELRLQN NEFTGLVPGN LFKAAGLEVL
0701: DLRNNNFSGK ILNTIDQTSK LRILLLRNNS FQTYIPGKIC QLSEVGLLDL SHNQFRGPIP SCFSKMSFGA EQNDRTMSLV ADFDFSYITF LPHCQYGSHL
0801: NLDDGVRNGY QPKPATVVDF LTKSRYEAYQ GDILRYMHGL DLSSNELSGE IPIEIGDLQN IRSLNLSSNR LTGSIPDSIS KLKGLESLDL SNNKLDGSIP
0901: PALADLNSLG YLNISYNNLS GEIPFKGHLV TFDERSYIGN AHLCGLPTNK NCISQRVPEP PSVSTHAKEE ENEEEGNVID MVWFYWTCAA VYISTSLALF
1001: AFLYIDSRWS REWFYRVDLC VHHILQFKRS SVCN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)