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AT1G07380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Neutral/alkaline non-lysosomal ceramidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT5G58980.1); Has 713 Blast hits to 570 proteins in 199 species: Archae - 0; Bacteria - 295; Metazoa - 184; Fungi - 101; Plants - 78; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQWEeggNOG:KOG2232EMBL:CP002684EnsemblPlants:AT1G07380
EnsemblPlants:AT1G07380.1entrez:837250GeneID:837250GO:GO:0005774
GO:GO:0005783GO:GO:0016021GO:GO:0034599GO:GO:0090156
Gramene:AT1G07380.1hmmpanther:PTHR12670hmmpanther:PTHR12670:SF4InParanoid:F4HQM3
InterPro:IPR006823InterPro:IPR031329InterPro:IPR031331KEGG:00600+3.5.1.23
KEGG:ath:AT1G07380KO:K12349OMA:HSEYLIGPANTHER:PTHR12670
PaxDb:F4HQM3Pfam:PF04734Pfam:PF17048PRIDE:F4HQM3
ProteinModelPortal:F4HQM3Proteomes:UP000006548Reactome:R-ATH-1660662RefSeq:NP_172218.1
SMR:F4HQM3STRING:3702.AT1G07380.1TAIR:AT1G07380TMHMM:TMhelix
UniGene:At.49300UniProt:F4HQM3
Coordinates (TAIR10) chr1:-:2264829..2268306
Molecular Weight (calculated) 86776.10 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.32
Length 779 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSLVRLWN TCFPSFFYIS TVLFLLTGGG VYSHSEYLIG LGSYDITGPA ADVNMMGYAN MEQVASGIHF RLRARTFIVS EPQGKRVVFV NLDACMASQI
101: VKLKVIERLK ARYGDLYTEQ NVGISGIHTH AGPGGYLQYV VYIVTSLGFV RQSFDALVDG IENSIIQAHE NLRPGSIFLN NGELLDAGVN RSPSAYLNNP
201: SKERSKHKYN VDKEMTLLKF VDDQWGPVGS FNWFATHGTS MSRTNSLISG DNKGAASRFM EDWYEQNTAE RSYSEEFISD EIPRRVSSLI ENHQDSHHEL
301: LELASYFESQ PGKPVTRISS SARRVRSALR KADKPGFVSA FCQTNCGDVS PNVLGAFCLD TGLPCDFNHS TCGGKNEMCY GRGPGYPDEF ESTRIIGERQ
401: FKMALELFNK ASEQLQGKVD YRHVYVDFSQ LNVTLPKKDG KSEVVKTCPA AMGFAFAAGT TDGPGAFDFT QGDDKGNPFW RLVRNVLKTP DKKQIDCHYP
501: KPILLDTGEM TKPYDWAPSI LSLQVLRIGQ LFILSVPGEF TTMAGRRLRY AVKTQLKNSG NKDLSGEIHV VIAGLANGYS QYVTTFEEYQ VQRYEGASTL
601: YGPHTLSGYI QEFKKLSKSL VLDMPVQPGP QPPDLLDKQL SFLTPVMMDT TPSGDSFGDV ISDVPKNLSL KRGNGQVTVV FRSACPRNDL LTEGTFTLVE
701: RLEQKDKTWT PVYDDDDLCL RFKWSRHKKL SSRSQATVEW RIPESASPGV YRITHFGAAK KLFGSVHHFT GSSSAFVVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)