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AT1G06650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.975
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G06640.1); Has 7290 Blast hits to 7263 proteins in 928 species: Archae - 0; Bacteria - 977; Metazoa - 84; Fungi - 531; Plants - 4672; Viruses - 0; Other Eukaryotes - 1026 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT1G06650EnsemblPlants:AT1G06650.1entrez:837175hmmpanther:PTHR10209
hmmpanther:PTHR10209:SF122Pfam:PF03171Pfam:PF14226Pfscan:PS51471
SUPFAM:SSF51197
Coordinates (TAIR10) chr1:+:2035909..2037047
Molecular Weight (calculated) 35728.80 Da
IEP (calculated) 5.96
GRAVY (calculated) -0.36
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMMKIDPLF DRASELKAFD ETKTGVKGLV DSGVSQVPRI FHHPTVKLST PKPLPSDLLH LKTIPTIDLG GRDFQDAIKR NNAIEEIKEA AAKWGFFQVI
101: NHGVSLELLE KMKKGVRDFH EQSQEVRKEF YSRDFSRRFL YLSNFDLFSS PAANWRDTFS CTMAPDTPKP QDLPEICRDI MMEYSKQVMN LGKFLFELLS
201: EALGLEPNHL NDMDCSKGLL MLSHYYPPCP EPDLTLGTSQ HSDNSFLTVL LPDQIEGLQV RREGHWFDVP HVSGALIINI GDLLQFGAQS IGEQSNKSSS
301: VCRMFLYHWS KTES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)