suba logo
AT1G05370.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.726
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT3G22410.1); Has 487 Blast hits to 487 proteins in 112 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 189; Plants - 251; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y3Q0eggNOG:KOG1470EMBL:CP002684EnsemblPlants:AT1G05370
EnsemblPlants:AT1G05370.1entrez:837038Gene3D:3.40.525.10GeneID:837038
Gramene:AT1G05370.1hmmpanther:PTHR10174hmmpanther:PTHR10174:SF125InParanoid:F4I8Q8
InterPro:IPR001251InterPro:IPR011074KEGG:ath:AT1G05370OMA:NTACVER
PaxDb:F4I8Q8Pfam:PF00650Pfscan:PS50191PRIDE:F4I8Q8
PROSITE:PS50191ProteinModelPortal:F4I8Q8Proteomes:UP000006548RefSeq:NP_172029.2
SMART:SM00516SMR:F4I8Q8STRING:3702.AT1G05370.1SUPFAM:SSF46938
SUPFAM:SSF52087TAIR:AT1G05370UniGene:At.42403UniProt:F4I8Q8
Coordinates (TAIR10) chr1:-:1569418..1572280
Molecular Weight (calculated) 47501.00 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.28
Length 417 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKEQKDHH SVVESDDKVE AVLHLLRKHS PLTLKQEKFC NRACVGRFLR IKGDNVKKAA KQLRSCLSWR SSLGIESLIA DEFTAELAEG LAYVAGLDDE
101: CRPVLVFRIK QDYQKLHTQK QLTRLVVFTL EVAISTMSRN VEQFVILFDA SFFKSASAFM NILVTTLKIV AEYYPCRLFK TFVIDPPSLF SYLWKGIRTF
201: VDLSTATMIV SMQDFQDSFD YDDFSSSYPS RVSSLRFDTS SLKSTDKIGS CASSRFAFTV SRDGLDTVKP WCLTLTDTSS TKLGHNTGAY ISPLNARSFS
301: FASPAARSEP FGGPRRSFFA STPMPARTTD RHSIGTLRDP RIPRPSFFQS PAIFFRRESH VSKSEKPRDS FVQFLKFYRR PYDEMTYRSK MRPPLGGLVS
401: IVSTQIRRRH VSLSQRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)