suba logo
AT1G03710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cystatin/monellin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cystatin/monellin superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Proteinase inhibitor I25, cystatin (InterPro:IPR000010), Proteinase inhibitor I25, cystatin, conserved region (InterPro:IPR020381), Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: Cystatin/monellin superfamily protein (TAIR:AT4G03565.1); Has 113 Blast hits to 103 proteins in 7 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUDHeggNOG:ENOG41106Z7EMBL:AY954752EMBL:CP002684
EnsemblPlants:AT1G03710EnsemblPlants:AT1G03710.1EnsemblPlants:AT1G03710.2entrez:839427
GeneID:839427GO:GO:0004869Gramene:AT1G03710.1Gramene:AT1G03710.2
hmmpanther:PTHR31228hmmpanther:PTHR31228:SF12HOGENOM:HOG000131686InterPro:IPR000010
InterPro:IPR006525InterPro:IPR020381KEGG:ath:AT1G03710OMA:VAIDKYN
Pfam:PF00031PhylomeDB:Q58G57ProDom:PD001231Proteomes:UP000006548
RefSeq:NP_001117223.1RefSeq:NP_171867.2SMR:Q58G57SUPFAM:SSF54403
TAIR:AT1G03710TIGRfam:TIGR01638TIGRFAMs:TIGR01638UniGene:At.49847
UniProt:Q58G57
Coordinates (TAIR10) chr1:+:923492..924287
Molecular Weight (calculated) 23435.10 Da
IEP (calculated) 4.44
GRAVY (calculated) -0.93
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPKSSDVDT VEPEVMDADL SLKRKAETIE PADSDEGCEE EERNSESDDQ VWGFDSFEGS DYESPDEPPE DDEELEFRRY TRYYHESKGF KVDKLPKHVC
101: YGIRPLDLDA PFFKPNMTGR DYMEIMANVA IDKYNQVENK TLKLDHIVRV TVQLSYGYKA YITFMAKESP HGELVEYQAK AERKAWQRNI HPIFCRPARS
201: GA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)