suba logo
AT1G02900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : rapid alkalinization factor 1
Curator
Summary (TAIR10)
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. Mediates Ca2+-dependent signaling.
Computational
Description (TAIR10)
rapid alkalinization factor 1 (RALF1); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 33 (TAIR:AT4G15800.1); Has 267 Blast hits to 267 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 265; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24624DIP:DIP-61428NeggNOG:ENOG410JE1DeggNOG:ENOG4111BVJ
EMBL:AC009525EMBL:BT010174EMBL:CP002684EnsemblPlants:AT1G02900
EnsemblPlants:AT1G02900.1entrez:839389GeneID:839389Genevisible:Q9SRY3
GO:GO:0004871GO:GO:0005179GO:GO:0005622GO:GO:0007267
GO:GO:0009506GO:GO:0019722GO:GO:0030308GO:GO:0048046
GO:GO:0048364Gramene:AT1G02900.1hmmpanther:PTHR33136hmmpanther:PTHR33136:SF5
HOGENOM:HOG000237626InParanoid:Q9SRY3InterPro:IPR008801KEGG:ath:AT1G02900
OMA:KYISYQSPaxDb:Q9SRY3Pfam:PF05498Pfam:Q9SRY3
PhylomeDB:Q9SRY3PIR:D86159PRIDE:Q9SRY3PRO:PR:Q9SRY3
Proteomes:UP000006548RefSeq:NP_171789.1STRING:3702.AT1G02900.1TAIR:AT1G02900
tair10-symbols:ATRALF1tair10-symbols:RALF1tair10-symbols:RALFL1TMHMM:TMhelix
UniGene:At.42574UniProt:Q9SRY3
Coordinates (TAIR10) chr1:-:653976..654338
Molecular Weight (calculated) 12967.30 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.21
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSFTLFLT LTILVVFIIS SPPVQAGFAN DLGGVAWATT GDNGSGCHGS IAECIGAEEE EMDSEINRRI LATTKYISYQ SLKRNSVPCS RRGASYYNCQ
101: NGAQANPYSR GCSKIARCRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)