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AT1G02750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Drought-responsive family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Drought-responsive family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to water deprivation; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Drought induced 19/ RING finger protein 114 (InterPro:IPR008598); BEST Arabidopsis thaliana protein match is: Drought-responsive family protein (TAIR:AT4G02200.1); Has 236 Blast hits to 236 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 234; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JWAGeggNOG:ENOG4110546EMBL:AC009525EMBL:AC022521
EMBL:AK118790EMBL:BT030081EMBL:CP002684EnsemblPlants:AT1G02750
EnsemblPlants:AT1G02750.1entrez:839432ExpressionAtlas:Q8GWK1GeneID:839432
Genevisible:Q8GWK1GO:GO:0005634GO:GO:0005737hmmpanther:PTHR31875
hmmpanther:PTHR31875:SF5HOGENOM:HOG000238690InParanoid:Q8GWK1InterPro:IPR008598
InterPro:IPR027935InterPro:IPR033347OMA:DHITSHHPANTHER:PTHR31875
PaxDb:Q8GWK1Pfam:PF05605Pfam:PF14571Pfam:Q8GWK1
PhylomeDB:Q8GWK1PRIDE:Q8GWK1PRO:PR:Q8GWK1Proteomes:UP000006548
RefSeq:NP_171775.2STRING:3702.AT1G02750.1TAIR:AT1G02750UniGene:At.42581
UniProt:Q8GWK1
Coordinates (TAIR10) chr1:+:602673..604134
Molecular Weight (calculated) 25106.80 Da
IEP (calculated) 4.53
GRAVY (calculated) -0.84
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDDMWCVSS SGSSRSYRSE TAAKYQSGPY QDLEEFEEVD DDIAVEYPCP FCASDYDLVE LCHHIDEEHR HEANNGICPV CSKRVKMHMV DHITSHHRDV
101: LKSEQKEMSY REDPYLSDKY LQPHLDELPP SMNHHQHPSK HVSDQFLSFI NNSALPNQTK LVLPDSSVED KNPIKDSSAA KEGTSSCPLS DSDKLEKAKK
201: CEFVQGLLSS AMFDDECDSS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)