suba logo
AT1G02520.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-glycoprotein 11
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-glycoprotein 11 (PGP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 12 (TAIR:AT1G02530.1); Has 844961 Blast hits to 391444 proteins in 4162 species: Archae - 14749; Bacteria - 659839; Metazoa - 18308; Fungi - 13140; Plants - 9783; Viruses - 35; Other Eukaryotes - 129107 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G02520-MONOMERBioGrid:24588eggNOG:COG1132eggNOG:KOG0055
EMBL:AC022521EMBL:CP002684EnsemblPlants:AT1G02520EnsemblPlants:AT1G02520.1
entrez:839353Gene3D:3.40.50.300GeneID:839353Genevisible:Q9FWX7
GO:GO:0005524GO:GO:0005886GO:GO:0009506GO:GO:0010315
GO:GO:0010329GO:GO:0010540GO:GO:0016021GO:GO:0042626
Gramene:AT1G02520.1hmmpanther:PTHR24221hmmpanther:PTHR24221:SF205InParanoid:Q9FWX7
InterPro:IPR003439InterPro:IPR003593InterPro:IPR011527InterPro:IPR017871
InterPro:IPR027417iPTMnet:Q9FWX7KEGG:ath:AT1G02520KO:K05658
OMA:AFFKPAHPaxDb:Q9FWX7Pfam:PF00005Pfam:PF00664
Pfam:Q9FWX7Pfscan:PS50893Pfscan:PS50929PhylomeDB:Q9FWX7
PIR:E86155PRIDE:Q9FWX7PRO:PR:Q9FWX7PROSITE:PS00211
PROSITE:PS50893PROSITE:PS50929ProteinModelPortal:Q9FWX7Proteomes:UP000006548
RefSeq:NP_171753.1scanprosite:PS00211SMART:SM00382SMR:Q9FWX7
STRING:3702.AT1G02520.1SUPFAM:SSF52540SUPFAM:SSF90123TAIR:AT1G02520
tair10-symbols:PGP11TMHMM:TMhelixUniGene:At.42596UniProt:Q9FWX7
Coordinates (TAIR10) chr1:+:524134..528745
Molecular Weight (calculated) 137675.00 Da
IEP (calculated) 7.80
GRAVY (calculated) 0.15
Length 1278 amino acids
Sequence (TAIR10)
(BLAST)
0001: MNGDGAREGD SVSHEPSTSK SPKEGEETKK EEKSEEKANT VPFYKLFAFA DSSDVLLMIC GSIGAIGNGM SLPFMTLLFG DLIDSFGKNQ NNKDIVDVVS
0101: KVCLKFVYLG LGTLGAAFLQ VACWMITGER QAARIRSTYL KTILRQDIGF FDVETNTGEV VGRMSGDTVL IQDAMGEKVG KFIQLVSTFV GGFVLAFIKG
0201: WLLTLVMLTS IPLLAMAGAA MALIVTRASS RGQAAYAKAA TVVEQTIGSI RTVASFTGEK QAINSYKKFI TSAYKSSIQQ GFSTGLGLGV MFFVFFSSYA
0301: LAIWFGGKMI LEKGYTGGAV INVIIIVVAG SMSLGQTSPC VTAFAAGQAA AYKMFETIKR KPLIDAYDVN GKVLEDIRGD IELKDVHFSY PARPDEEIFD
0401: GFSLFIPSGA TAALVGESGS GKSTVISLIE RFYDPKSGAV LIDGVNLKEF QLKWIRSKIG LVSQEPVLFS SSIMENIAYG KENATVEEIK AATELANAAK
0501: FIDKLPQGLD TMVGEHGTQL SGGQKQRIAI ARAILKDPRI LLLDEATSAL DAESERVVQE ALDRVMVNRT TVIVAHRLST VRNADMIAVI HRGKMVEKGS
0601: HSELLKDSEG AYSQLIRLQE INKDVKTSEL SSGSSFRNSN LKKSMEGTSS VGNSSRHHSL NVLGLTTGLD LGSHSQRAGQ DETGTASQEP LPKVSLTRIA
0701: ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PAHELKRDSR FWAIIFVALG VTSLIVSPTQ MYLFAVAGGK LIRRIRSMCF EKAVHMEVAW
0801: FDEPQNSSGT MGARLSADAT LIRALVGDAL SLAVQNVASA ASGLIIAFTA SWELALIILV MLPLIGINGF VQVKFMKGFS ADAKSKYEEA SQVANDAVGS
0901: IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFFILFCVY ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1001: AAASIFAIID RKSKIDSSDE TGTVLENVKG DIELRHLSFT YPARPDIQIF RDLCLTIRAG KTVALVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1101: LQLKWLRQQM GLVGQEPVLF NDTIRANIAY GKGSEEAATE SEIIAAAELA NAHKFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1201: TSALDAESER VVQDALDRVM VNRTTIVVAH RLSTIKNADV IAVVKNGVIA EKGTHETLIK IEGGVYASLV QLHMTASN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)