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AT1G02230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 4 (NAC004); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 5 (TAIR:AT1G02250.1); Has 2785 Blast hits to 2773 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2773; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS4YeggNOG:ENOG41119CBEMBL:AB493424EMBL:CP002684
EMBL:U89959EnsemblPlants:AT1G02230EnsemblPlants:AT1G02230.1entrez:837630
GeneID:837630GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT1G02230.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF5
HOGENOM:HOG000237406InParanoid:O81913InterPro:IPR003441KEGG:ath:AT1G02230
OMA:HEYHATSPaxDb:O81913Pfam:O81913Pfam:PF02365
Pfscan:PS51005PhylomeDB:O81913PRIDE:O81913PRO:PR:O81913
PROSITE:PS51005ProteinModelPortal:O81913Proteomes:UP000006548RefSeq:NP_171726.2
SMR:O81913STRING:3702.AT1G02230.1SUPFAM:SSF101941TAIR:AT1G02230
tair10-symbols:ANAC004tair10-symbols:NAC004UniGene:At.71673UniProt:O81913
Coordinates (TAIR10) chr1:-:435174..436775
Molecular Weight (calculated) 40898.60 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.79
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNPVGFRFR PNDEEIVDHY LRPKNLDSDT SHVDEVISTV DICSFEPWDL PSKSMIKSRD GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTVMRK
101: RGNREKIGEK RVLVFKNRDG SKTDWVMHEY HATSLFPNQM MTYTVCKVEF KGEETEISSS STGSEIEQIH SLIPLVNSSG GSEGSSFHSQ ELQNSSQSGV
201: FANVQGESQI DDATTPIEEE WKTWLNNDGD EQRNIMFMQD HRSDYTPLKS LTGVFSDDSS DDNDSDLISP KTNSIGTSST CASFASSNHQ IDQTQHSPDS
301: TVQLVSLTQE VSQGPGQVTV IREHKLGEES VKKKRASFVY RMIHRLVKKI HQCYSISRT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)