AT1G01710.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:peroxisome 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Acyl-CoA thioesterase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Acyl-CoA thioesterase family protein; FUNCTIONS IN: cyclic nucleotide binding, acyl-CoA thioesterase activity; INVOLVED IN: acyl-CoA metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), Acyl-CoA thioesterase (InterPro:IPR003703), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: Acyl-CoA thioesterase family protein (TAIR:AT4G00520.2); Has 3628 Blast hits to 3595 proteins in 999 species: Archae - 0; Bacteria - 1940; Metazoa - 444; Fungi - 348; Plants - 71; Viruses - 0; Other Eukaryotes - 825 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:262950..266029 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 48157.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 427 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNTESVVEFL GNVPLLQKLP SSSLKKIAQV VVPKRYGKGD YVVREDQTWD GCYFILQGEA QVSGPDEEDN RSEFLLKQYD YFGVGLSGNV HSADIVAMSQ 101: LTCLVLPRDH CHLLETNSIW QSDTSLDKCS LVERILQLDP LELNIFRGIT LPDAPIFGKV FGGQFVGQAL AAASKTVDFL KVVHSLHSYF LLVGDIDIPI 201: IYQVHRIRDG NNFATRRVDA VQKGNIIFIL LASFQKEQQG FEHQESTMPS VPDPDTLLSL EELRESRITD PHLPRSYRNK VATRNFVPWP IEIRFCEPSN 301: STNQTKSPPR LNYWFRAKGR LSDDQALHRC VVAFASDLIF CGVGLNPHRR KGVKSAALSL DHAMWFHRPL RADEWLLYVI VSPTAHETRG FVTGQMFNRK 401: GELVVSLTQE ALLREARPPK PSGTSKL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)