AT5G59980.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Polymerase/histidinol phosphatase-like | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 1908 Blast hits to 1535 proteins in 339 species: Archae - 16; Bacteria - 381; Metazoa - 491; Fungi - 307; Plants - 100; Viruses - 13; Other Eukaryotes - 600 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:24147207..24149783 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78039.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||
| Length | 705 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFFDLSIPY NEPPRSGGKE IAGGKTLRLK LATKAMELGY VGIAHNRSIK GVMSDKDSCT IPLLTLGSLI KVAPRLASSV GFHRDLLGVP RTTPFRQYTR 101: LTVHVESNAQ CQSLNSGNPI LKSYDIIAVR PMNQNAFDYA CEKAEVDLIS IDFTDKMLFR LKHPMVKAAI QRGIYFEIKY SDILMDAQTR RQVISNAKLL 201: VDWTRGKNLI ISSGAPSVTE LRGPNDVINL MFLLGLSAER ARAAISKNCR NMIAKVLKKK RFHKEAVRVE LLSAGDTFSL EQPLSEDCMK WDRLSSGEGD 301: MLLDDLAKAF DATNVVAHKS SKAIDFTSVL DGLPKHGFRV KDIVGTESVT QPSAAKVIDT QVHSSNQVSE LRMATASSDD NLREIETISQ IDMLMSEDDN 401: KVEPTTNVLK EEAFALRKCS ASHGQGILVQ NQTATPFTLT RCTKSEAASD VSMNIESTSE GGSMSPSKSD HGIPQSPVEV NNMGNAAFEE EASVDENSKE 501: RATTGHASND EMHITESGHH ASIDDEKHIP EPEHLTSIAD EMKIDCSSEA NHDEYMEVTM EDQMHETGDS KIILPNLSSE TTDLLSESGK SLSPDAVVQD 601: HDEASRLESD ETKLEEEASV PNHNTFEITM EDNKVEELTI EDEKVEKTET EASHQAQVQS SENNNDTKSG KTQAKRSRVR LPQLRPFKPF LLQSRFKRIS 701: KKRKH |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)