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AT5G59560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : sensitivity to red light reduced protein (SRR1)
Curator
Summary (TAIR10)
Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.
Computational
Description (TAIR10)
SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 187 Blast hits to 182 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 13; Plants - 69; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111JHVeggNOG:KOG3131EMBL:BT024906EnsemblPlants:AT5G59560EnsemblPlants:AT5G59560.1EnsemblPlants:AT5G59560.2entrez:836075
ExpressionAtlas:Q24JI3GeneID:836075Gramene:AT5G59560.1Gramene:AT5G59560.2hmmpanther:PTHR28626hmmpanther:PTHR28626:SF3InterPro:IPR012942
iPTMnet:Q24JI3KEGG:ath:AT5G59560OMA:CEAELYDPaxDb:Q24JI3Pfam:PF07985Pfam:Q8GWZ6PhylomeDB:Q24JI3
PRIDE:Q24JI3RefSeq:NP_200764.1RefSeq:NP_851224.1STRING:3702.AT5G59560.1TAIR:AT5G59560tair10-symbols:SRR1UniGene:At.28233
UniProt:Q24JI3UniProt:Q8GWZ6
Coordinates (TAIR10) chr5:-:24000747..24001574
Molecular Weight (calculated) 31476.20 Da
IEP (calculated) 4.67
GRAVY (calculated) -0.44
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: METTVKNSSS DGEWKVVLPS KGRQGRRRKP KPKGQAEEEE QPWKSDDLEI DPQRQARLKQ KMEISLKKIE SSSFYTAFLE QLKSPEVSNQ IRLVLGSETQ
101: LQMVMYGIGS IESYESPRFQ LSIAILMKRE FDWVGDNIEV FDPVLSATES SYLESLGCSV LSVNEQARRE ALKPTLFFMP HCEANLYSNL LQANWRMDRL
201: SKIALFGNSF QMYEEQVSFD AEVICATKRI IAAQRVTSEF AIETESDDYF AAFHDSSWHF FSSGIDSELP LFVSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)