AT5G59560.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : sensitivity to red light reduced protein (SRR1) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SENSITIVITY TO RED LIGHT REDUCED 1 (SRR1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of circadian rhythm, red, far-red light phototransduction; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sensitivity To Red Light Reduced-like, SRR1 (InterPro:IPR012942); Has 187 Blast hits to 182 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 13; Plants - 69; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:24000747..24001574 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31476.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.67 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||
| Length | 275 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METTVKNSSS DGEWKVVLPS KGRQGRRRKP KPKGQAEEEE QPWKSDDLEI DPQRQARLKQ KMEISLKKIE SSSFYTAFLE QLKSPEVSNQ IRLVLGSETQ 101: LQMVMYGIGS IESYESPRFQ LSIAILMKRE FDWVGDNIEV FDPVLSATES SYLESLGCSV LSVNEQARRE ALKPTLFFMP HCEANLYSNL LQANWRMDRL 201: SKIALFGNSF QMYEEQVSFD AEVICATKRI IAAQRVTSEF AIETESDDYF AAFHDSSWHF FSSGIDSELP LFVSD |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)