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AT1G07960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 5-1
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily.
Computational
Description (TAIR10)
PDI-like 5-1 (PDIL5-1); INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin family protein (TAIR:AT2G47470.1); Has 11046 Blast hits to 9080 proteins in 1903 species: Archae - 38; Bacteria - 4054; Metazoa - 3042; Fungi - 886; Plants - 964; Viruses - 4; Other Eukaryotes - 2058 (source: NCBI BLink).
Protein Annotations
BioGrid:22552DNASU:837311eggNOG:COG0526eggNOG:KOG0191
EMBL:AC026875EMBL:AK117714EMBL:BT004994EMBL:CP002684
EMBL:U63815EnsemblPlants:AT1G07960EnsemblPlants:AT1G07960.1EnsemblPlants:AT1G07960.2
EnsemblPlants:AT1G07960.3entrez:837311Gene3D:3.40.30.10GeneID:837311
Genevisible:Q8GYD1GO:GO:0003756GO:GO:0005623GO:GO:0006457
GO:GO:0034976GO:GO:0045454Gramene:AT1G07960.1Gramene:AT1G07960.2
Gramene:AT1G07960.3hmmpanther:PTHR18929hmmpanther:PTHR18929:SF104HOGENOM:HOG000239975
InParanoid:Q8GYD1InterPro:IPR012336InterPro:IPR013766KEGG:ath:AT1G07960
ncoils:CoilOMA:GEVDCGTPaxDb:Q8GYD1Pfam:PF00085
Pfam:Q8GYD1Pfscan:PS51352PhylomeDB:Q8GYD1PRIDE:Q8GYD1
PRO:PR:Q8GYD1PROSITE:PS51352ProteinModelPortal:Q8GYD1Proteomes:UP000006548
RefSeq:NP_172274.1RefSeq:NP_973787.1RefSeq:NP_973788.1SMR:Q8GYD1
STRING:3702.AT1G07960.1SUPFAM:SSF52833SwissPalm:Q8GYD1TAIR:AT1G07960
tair10-symbols:ATPDIL5-1tair10-symbols:PDIL5-1UniGene:At.42281UniProt:Q8GYD1
Coordinates (TAIR10) chr1:+:2467681..2468831
Molecular Weight (calculated) 16566.10 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.12
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLGARLVAP MIILLLFIPI ELVKAEVITL TPETFSDKIK EKDTAWFVKF CVPWCKHCKK LGNLWEDLGK AMEGDDEIEV GEVDCGTSRA VCTKVEIHSY
101: PTFMLFYNGE EVSKYKGKRD VESLKAFVVE ETEKAAEKAQ LEDKEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)