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AT5G49910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:23444301 (2013): mitochondrion
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast heat shock protein 70-2
Curator
Summary (TAIR10)
Stromal heat shock protein involved in protein import into chloroplast.
Computational
Description (TAIR10)
chloroplast heat shock protein 70-2 (CPHSC70-2EAT SHOCK PROTEIN 70-2); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, response to cadmium ion, protein targeting to chloroplast, response to heat; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: chloroplast heat shock protein 70-1 (TAIR:AT4G24280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20300eggNOG:COG0443eggNOG:KOG0102EMBL:AB024032EMBL:AF217459EMBL:AY081331EMBL:BT000919
EMBL:BT008452EMBL:CP002688EnsemblPlants:AT5G49910EnsemblPlants:AT5G49910.1entrez:835054Gene3D:1.20.1270.10Gene3D:2.60.34.10
GeneID:835054Genevisible:Q9LTX9GO:GO:0005524GO:GO:0006457GO:GO:0009408GO:GO:0009507GO:GO:0009532
GO:GO:0009570GO:GO:0009579GO:GO:0009941GO:GO:0045036GO:GO:0046686GO:GO:0048046HAMAP:MF_00332
hmmpanther:PTHR19375hmmpanther:PTHR19375:SF204HOGENOM:HOG000228135InParanoid:Q9LTX9IntAct:Q9LTX9InterPro:IPR012725InterPro:IPR013126
InterPro:IPR018181InterPro:IPR029047InterPro:IPR029048iPTMnet:Q9LTX9KEGG:ath:AT5G49910KO:K03283ncoils:Coil
OMA:SVAYQVEPaxDb:Q9LTX9Pfam:PF00012Pfam:Q9LTX9PhylomeDB:Q9LTX9PRIDE:Q9LTX9PRINTS:PR00301
PRO:PR:Q9LTX9PROSITE:PS00297PROSITE:PS00329PROSITE:PS01036ProteinModelPortal:Q9LTX9Proteomes:UP000006548RefSeq:NP_199802.1
scanprosite:PS00297scanprosite:PS00329scanprosite:PS01036SMR:Q9LTX9STRING:3702.AT5G49910.1SUPFAM:SSF100920SUPFAM:SSF100934
SUPFAM:SSF53067TAIR:AT5G49910tair10-symbols:cpHsc70-2tair10-symbols:CPHSC70-2EAT SHOCK PROTEIN 70-2tair10-symbols:HSC70-7TIGRfam:TIGR02350TIGRFAMs:TIGR02350
UniGene:At.21829UniGene:At.70293UniProt:Q9LTX9World-2DPAGE:0003:Q9LTX9
Coordinates (TAIR10) chr5:+:20303470..20306295
Molecular Weight (calculated) 77000.80 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.36
Length 718 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAAQIHI LGGIGFPTSS SSSSTKNLDN KTNSIPRSVF FGNRTSPFTT PTSAFLRMGR RNNNASRYTV GPVRVVNEKV VGIDLGTTNS AVAAMEGGKP
101: TIVTNAEGQR TTPSVVAYTK SKDRLVGQIA KRQAVVNPEN TFFSVKRFIG RRMNEVAEES KQVSYRVIKD ENGNVKLDCP AIGKQFAAEE ISAQVLRKLV
201: DDASRFLNDK VTKAVITVPA YFNDSQRTAT KDAGRIAGLE VLRIINEPTA ASLAYGFERK SNETILVFDL GGGTFDVSVL EVGDGVFEVL STSGDTHLGG
301: DDFDKRVVDW LASTFKKDEG IDLLKDKQAL QRLTEAAEKA KIELSSLTQT NMSLPFITAT ADGPKHIETT LTRGKFEELC SDLLDRVRTP VENSLRDAKL
401: SFKDIDEVIL VGGSTRIPAV QDLVRKLTGK EPNVSVNPDE VVALGAAVQA GVLSGDVSDI VLLDVTPLSL GLETLGGVMT KIIPRNTTLP TSKSEVFSTA
501: ADGQTSVEIN VLQGEREFVR DNKSIGSFRL DGIPPAPRGV PQIEVKFDID ANGILSVSAS DKGTGKKQDI TITGASTLPK DEVDTMVQEA ERFAKEDKEK
601: RDAIDTKNQA DSVVYQTEKQ LKELGEKIPG PVKEKVEAKL QELKEKIASG STQEIKDTMA ALNQEVMQIG QSLYNQPQPG GADSPPGGEA SSSSDTSSSA
701: KGGDNGGDVI DADFTDSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)