AT5G49680.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Conserved among eukaryotes, similar to Arabidopsis SABRE. The phenotype of the kip/sab double mutant suggests related functions for both genes, however, the KIP protein is mostly required for tip-growth. Predicted to be targeted to the secretory pathway. mRNA was detected in all organs, with most abundance in pollen and roots. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FMP27, domain-6, C-terminal (InterPro:IPR019443), Protein of unknown function FMP27, domain-4 (InterPro:IPR019441); BEST Arabidopsis thaliana protein match is: Golgi-body localisation protein domain ;RNA pol II promoter Fmp27 protein domain (TAIR:AT1G58250.1); Has 241 Blast hits to 185 proteins in 77 species: Archae - 0; Bacteria - 2; Metazoa - 115; Fungi - 36; Plants - 79; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:20176385..20188307 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 290427.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.51 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 2587 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAAFLVMFIF TIALFVALLW VFFKSLPWIL RHSAGITLSF QFDGWNCLKD VALQFKKGSI ESIVIGEFKA NLSQSLVELC ATAFIQDPKV IFSICDLKIV 0101: TRPSHSSKGP RKPKTRKSSS GGKGKLMLFA NIGRFFSVSM TNMVVQTPKA TAEIKELELD LSKDRGSGNF FMKLYLLPIF VQIGEPHVTS THSPEMDSDI 0201: CLARQTPSKT AEGSSSSSFH CEKISLSCEF GPNRKSSPSI KNVEVDLANA VLNLNEKLLL KNKSSTSAAS KGEVIDSSSG NTTSEKPPKQ PMNVLVAKHA 0301: SKFPEKVLFD LTKLEIRFVH QEHDFSIANS IKGFQLRSAK SQSGEDGKED TCLDFAMELQ EMHLFRESEV SVLEMTKFGV FTKVYCPIQE SLPVRAEVEI 0401: KLGGIMSNII MTRFEPLLRL HFSRKKKMVL KEERPTIAKS ETTGFKAVVW KCATSAPDVT VVLYNPGGSP IYQCGLDSFQ ATANNMSNRG TVVQMELNEL 0501: TLCMVDEHKG CLKESLFGLE SDPGSLINIR KVRSEWGKKE VLPEGDGSKG KQTLVVDVSE IGLLFSFRSV EALTVNAISS QAYIKSLTGS SSKNKQEKGA 0601: HRSKPPSGRG TQLLKLNVER FSLNFAGDSS LENTVIDDPK RVNYGSQGGR IIISVSADGS PRTASVFSTL SEEHEKLKYI ISFEILKFGF TLNKEIQSTQ 0701: VELETAKAIY QEFLEEPHQV SRVTLCDIQN AKFVRRIGGG KEVSICSLFS ASNIAVRWEP DVHISMVELG LRLKSLVLTQ KLKQHGNRNP EEASTVTGDK 0801: QKEEPTTTPN SLDKKKKKES IFAVDVEMLS ITAEAGDGVE AEVQIQSIFS ENVGIGVLLE GFMLGFCGCR IVKSSRVQIS RIPSMPSTSS SVTPATGGTP 0901: WDWIVQGVDI HICMPFRLQL RAIDDAVEEM LRALKLVTNA KTKLIFPIKK ESSTPKKPGS KKVGRIRFGI RKLIFDIEEE PLQGWLDEHY HLMRKEAYEL 1001: AIRSKFLDEL MSSGNQVPKT GGDESDGEKK ISFEGEEIDP QDPAIIQMMN EKLYKQSFSS YYKSCQSLRL SDGSGACKEG FQAGFKMSTS RTSLLSVSVT 1101: DLDLSLTAIG GGEAGMIEIV KKLDPVAEEK DIPFSRLYGS NLRLNTGTLA VQIRNYTFPL LSTAFGKCEG CLVLAQQATA FQPQIIHDVY IGRWRKVQML 1201: RSASGTTPAM KTYLDLPIKF QKGEISFGIG YEPVLADISY AFTVALRRAN LSLKGPGLLQ PPKKEKSLPW WDEMRNYVHG NVTLSFSETK WIVLGSPDPY 1301: EKLDKLHMTS GSVEIQQYDG RVHFSAEDIK IFFSSFEGLA RHYPNSPVCP SSYPFLEVPR FSLEVRMDWE CESGSPLNHY LFALPIEGKA RDKIYDPFRS 1401: TSLSLRWDFT LRPENPSVSA VDQTKKVGSE CKPEKSSFSP PTINIGAHDL AWLIRFWNMN YLPPYKLRTF SRWPRFGVPR IPRSGNLSLD RVMTEYNLRL 1501: DVTPICIKHM TLDSNNPAKG LTFDMTKLKY EICFSRGNQD FTFECKRETL DPVYQGIDLH LPKAFLRRDQ HCSKPAQMSR TSSLSGSTDR VTSDNGTSTS 1601: DGTEKHPDDG FLFSSDYFTI RRQAPKADPE RLMVWKEEGK IYREKVDARS TKEKQSEPEE NSHSDPSDDD GYNVVIADNC QRIFVYGLKL LWNIENRDAV 1701: LSFAGGMSKA FQPPKPSPSR QYAQRKLLEG NQKHSESEVS QDEPTKQPST GSGNLASQSK EPAEVLSPSS EPIKTENFAS FPLGATKTGD SNDPEEEGTR 1801: HFMVNVVEPQ FNLHSEDING RFLLAAASGR VLARSFHSVV HVAYDMIEKA AQNENDHNPE NGTDMTWTRM EVSMMLEHVQ AHVAPTDVDP GAGVQWLPKI 1901: RRSSPKAKRT GALLERVFMP CDMYFQYTRH KGVTPDLKVK PLKELTFNSR NITASMTSRQ FQVMTDVLSN LLFARLPKAH NDSLKLSGEE DDEVEEEIDE 2001: VVPDGIEEVE LAKIELEAKE RDRMMLLDDI RKLTQNESNS GNINLEKESD FWMISGGRPV LVERLRKAYL SVQQSRKTAY TALRTSVKNA AELRLLEKDK 2101: NKRPSSAMRI SLQINKVIWS MVLDGKTFAE VEIDNMIYDF NRDYRDIGIA QFTTRYVVLR NCLPNAKCDT VLSAWNPPPE WGKKVMLQVD ARQGAPKDGQ 2201: APYELFQVEI YPLKIHLTET MYTMMWEYIF PGEEQHSQRR EEVWKVSTTS GSRRRKGSFA QEAAALLAAS DLGQGSKNQS LKSSTIRGSG RELRRTSSFD 2301: RSWEETVAES VATELVLSSM EHQGESSKGK LKDSKTSKAG GRSVHEEKKG EKSLEDKKSR PQKIMQFQTI KISQVELLIT YEGSRFVVND MKLCMDTFHR 2401: VEFSGTWRRL FSRVKKHIIW GVLKSVTGMQ MKKFKDKAHV PKDDIGLRDK DESGRTDQES GAWVKRPGDN AGDGFVTSIR GIFNTQRRKA KKFVLRTMRG 2501: EAEDNFPGEW SDNESDFSPF ARQLTITKAK KLIRRHSKKF QNQNTTKGSK KTQLSPTLSP PKEEDQYESD SSSGSSAYEE FLDQNQI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)