AT5G47430.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DWNN domain, a CCHC-type zinc finger | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DWNN domain, a CCHC-type zinc finger; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DWNN domain (InterPro:IPR014891), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DWNN domain, a CCHC-type zinc finger (TAIR:AT4G17410.1); Has 13459 Blast hits to 9419 proteins in 455 species: Archae - 2; Bacteria - 407; Metazoa - 7832; Fungi - 2088; Plants - 1220; Viruses - 27; Other Eukaryotes - 1883 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19235819..19240147 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92215.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.97 | ||||||||||||||||||||||||||||||||||||||||
| Length | 831 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIPKNTSVL IRRVPGRPRI TVITTQEPRI QNKVEDVQAE TTNFPVADPS AAEFPEDEYD EFGTDLYSIP DTQDAQHIIP RPHLATADDK VDEESKIQAL 101: IDTPALDWQQ RQGQDTFGAG RGYGRGMPGR MNGRGFGMER KTPPPGYVCH RCNIPGHFIQ HCPTNGDPNY DVKRVKPPTG IPKSMLMATP DGSYSLPSGA 201: VAVLKPNEDA FEKEMEGLPS TTRSVGELPP ELKCPLCKEV MKDAALTSKC CYKSFCDKCI RDHIISKSMC VCGRSDVLAD DLLPNKTLRD TINRILEAGN 301: DSTENVGSVG HIPDLESARC PPPKALSPTT SVASKGEKKP VLSNNNDAST LKAPMEVAEI TSAPRASAEV NVEKPVDACE STQGSVIVKE ATVSKLNTQA 401: PKEEMQQQVA AGEPGKKKKK KPRVPGNDMQ WNPVPDLAGP DYMMQMGPGP QYFNGMQPGF NGVQPGFNGV QPGFNGFHPG FNGFGGPFPG AMPPFMGYGL 501: NPMDMGFGGG MNMMHPDPFM AQGFGFPNIP PPHRDLAEMG NRMNLQRAMM GRDEAEARNA EMLRKRENER RPEGGKMFRD GENSRMMMNN GTSASASSIN 601: PNKSRQAPPP PIHDYDRRRR PEKRLSPEHP PTRKNISPSR DSKRKSERYP DERDRQRDRE RSRHQDVDRE HDRTRDRRDE DRSRDHRHHR GETERSQHHH 701: RKRSEPPSSE PPVPATKAEI ENNLKSSVFA RISFPEEETS SGKRRKVPSS SSTSVTDPSA SASAAAAVGT SVHRHSSRKE IEVADYESSD EDRHFKRKPS 801: RYARSPPVVV SDVSEDKLRY SKRGKGERSR A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)