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AT5G46150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.474
golgi 0.391
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF284, transmembrane eukaryotic (InterPro:IPR005045); BEST Arabidopsis thaliana protein match is: ALA-interacting subunit 1 (TAIR:AT3G12740.1); Has 857 Blast hits to 857 proteins in 216 species: Archae - 0; Bacteria - 0; Metazoa - 252; Fungi - 234; Plants - 162; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5035eggNOG:KOG2952EMBL:AB006698EMBL:AK175295EMBL:AK176348EMBL:AK176392EMBL:AK176644
EMBL:AK221710EMBL:AK228602EMBL:AY085923EMBL:BT024877EMBL:CP002688EnsemblPlants:AT5G46150EnsemblPlants:AT5G46150.1
EnsemblPlants:AT5G46150.2entrez:834657GeneID:834657Genevisible:Q67YS6GO:GO:0016021Gramene:AT5G46150.1Gramene:AT5G46150.2
hmmpanther:PTHR10926hmmpanther:PTHR10926:SF29HOGENOM:HOG000209056InParanoid:Q67YS6InterPro:IPR005045iPTMnet:Q67YS6KEGG:ath:AT5G46150
OMA:YGFTRGSPANTHER:PTHR10926PaxDb:Q67YS6Pfam:PF03381Pfam:Q67YS6PhylomeDB:Q67YS6PIRSF:PIRSF015840
PRO:PR:Q67YS6Proteomes:UP000006548RefSeq:NP_568657.1RefSeq:NP_851139.1STRING:3702.AT5G46150.1TAIR:AT5G46150TMHMM:TMhelix
UniGene:At.29969UniProt:Q67YS6
Coordinates (TAIR10) chr5:-:18708735..18710424
Molecular Weight (calculated) 39547.80 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.31
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MMEVEGSMNR APDQSSFLRS RRSKALYQFK QQKLPACKPV LTPISVITVF MLMGFVFIPI GLITLRASRD AIEIIDRYDV ECIPEEYRTN KLLYITDSSI
101: PKNCTRYLKV QKYMKAPIFI YYQLDNYYQN HRRYVKSRSD QQLLHGLEYS HTSSCEPEES SNGLPIVPCG LIAWSMFNDT FTFSRERTKL NVSRNNIAWK
201: SDREHKFGKN VYPINFQNGT LIGGAKLDPK IPLSDQEDFI VWMRAAALLS FRKLYGRIEE DLEPGKVVEV NLMNNYNTYS FSGQKKLILS TSNWLGGRND
301: FLGITYLVVG SSSIVISIIF MLLHLKNPRP YGDNSWNKKS LSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)