AT5G43500.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : actin-related protein 9 | ||||||||||||
| Curator Summary (TAIR10) |
encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes. | ||||||||||||
| Computational Description (TAIR10) |
actin-related protein 9 (ARP9); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17469991..17473429 | ||||||||||||
| Molecular Weight (calculated) | 65109.00 Da | ||||||||||||
| IEP (calculated) | 5.92 | ||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||
| Length | 584 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDYLKTVAPT QILSERGANL VVINLGSANV RVGLAMDEKP FNVPNCIARY ITQSGKPTVV DQMLNTEVTT NQHVDRERAY NSAASLLKIL FLDESSSSGS 101: ASRKMGRIDG YNQASTIKKD SVFTWTDVYE DEKISLASPA ETSPDKGDAS ASEAVPDVTD SKDTSESKRK YRKMIFGEEA LKISPKEPYC LYHPIRRGHF 201: NVSPHYSAQR VCEDLTAILD WILLEKLHIT HKERFSFHAV IVVPETFDTR EIKEMLTIVL GELYFNSAVV HQEGLSAVFG NGLTTACIVN IGAQTSTVVC 301: VEDGVSLPNT EKILPFGGED ICRCLLWIQR HYQKWPQINT DVLAKPIDML MLNQLKESFC EIRAGELETV ATVHSYEEGM PAVPHKTNLT SLNVPPMGLF 401: YPNLLVPEIF PQPPRQWFQD YENMLEDTWN MDFGGGGNMG LPMWDSFAFS PSKPKKEEKI GLAEAITSSI LSAGRIDLRR KLFSSIQLIG GAGLTKGLVA 501: AVEERVLHAI PPTEAIDTVQ VLPSRTEPQF VTWKGGAILG ILDFGREAWI ERHQWMVNGV NKGGLKKYKD SYHLQGQAMY FINP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)