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AT3G44600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.961
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclophilin71
Curator
Summary (TAIR10)
Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3.
Computational
Description (TAIR10)
cyclophilin71 (CYP71); CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G36130.1); Has 19122 Blast hits to 18688 proteins in 2726 species: Archae - 110; Bacteria - 7959; Metazoa - 3135; Fungi - 1772; Plants - 1406; Viruses - 0; Other Eukaryotes - 4740 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44600-MONOMERBioGrid:8905EC:5.2.1.8eggNOG:ENOG410XQB4
eggNOG:KOG0882EMBL:AL353818EMBL:AY062653EMBL:BT008382
EMBL:CP002686EnsemblPlants:AT3G44600EnsemblPlants:AT3G44600.1entrez:823585
Gene3D:2.130.10.10Gene3D:2.40.100.10GeneID:823585Genevisible:Q8W4D0
GO:GO:0003682GO:GO:0003755GO:GO:0005634GO:GO:0006457
GO:GO:0009909GO:GO:0009933GO:GO:0010082GO:GO:0010305
GO:GO:0010338GO:GO:0010358GO:GO:0031060GO:GO:0042277
GO:GO:0042393GO:GO:0048440GO:GO:0048443GO:GO:0048453
Gramene:AT3G44600.1hmmpanther:PTHR11071hmmpanther:PTHR11071:SF213HOGENOM:HOG000213214
InParanoid:Q8W4D0InterPro:IPR001680InterPro:IPR002130InterPro:IPR015943
InterPro:IPR017986InterPro:IPR024936InterPro:IPR029000iPTMnet:Q8W4D0
KEGG:ath:AT3G44600KO:K12736OMA:VVLHTTKPANTHER:PTHR11071
PaxDb:Q8W4D0Pfam:PF00160Pfam:PF00400Pfam:Q8W4D0
Pfscan:PS50072Pfscan:PS50294PhylomeDB:Q8W4D0PIR:T48940
PRIDE:Q8W4D0PRINTS:PR00153PRO:PR:Q8W4D0PROSITE:PS50072
PROSITE:PS50294ProteinModelPortal:Q8W4D0Proteomes:UP000006548RefSeq:NP_190046.2
SMART:SM00320SMR:Q8W4D0STRING:3702.AT3G44600.1SUPFAM:SSF50891
SUPFAM:SSF50978TAIR:AT3G44600tair10-symbols:CYP71UniGene:At.27435
UniProt:Q8W4D0
Coordinates (TAIR10) chr3:-:16165368..16169201
Molecular Weight (calculated) 70987.70 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.41
Length 631 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEESKNGGT TIPTEELAVV AVPPVVEEEE PMVGPGPAPR GKRKRPLQFE QAYLDSLPSA NMYEKSYMHR DVVTHVAVSA AEFFISGSMD GHLKFWKKKG
101: VGIEFAKHFR SHLGPIEGLA VSIDGLLCCT ISNDHAVKIY DVVNYDMMAM IRLPYIPGAV EWVYKQGDVK AKLAVSDRDS LFVHIYDPRS GSNEPIASKE
201: IHMNPIKVMK YNPVSDTMIS GDTKGIIEYW SATTLQFPED EVNFKLKSDT NLFEIIKCKT TISAIEVSPD GKQFSITAPD RRIRVFWFRT GKLRRVYDES
301: LVVAQDLQRS DAPLYRLEAI DFGRRMAVEK ELEKTESAPQ PNAVFDESSN FLIYATFLGI KVINLHTNTV ARILGKVESN ERYLRVALYQ GDQGGKKVRK
401: IPAAAANVNE SKEPLTDPTI LCCAFKKHRI YMFSRREPEE PEDASQGRDV FNEKPAADEL MSVSDIGNSA TTSLPENVIM HTTLGDIHMK LYPEECPKTV
501: ENFTTHCRNG YYDNHLFHRV IRGFMIQTGD PLGDGTGGQS IWGREFEDEF HKSLRHDRPF TLSMANAGPN TNGSQFFITT VATPWLDNKH TVFGRVVKGM
601: DVVQGIEKVK TDKNDRPYQD VKILNVTVPK S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)