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AT5G41190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1439eggNOG:KOG2463EMBL:AB010072EMBL:CP002688EnsemblPlants:AT5G41190EnsemblPlants:AT5G41190.1entrez:834121
GeneID:834121GO:GO:0000469GO:GO:0004521GO:GO:0005737GO:GO:0006364GO:GO:0009553GO:GO:0009555
GO:GO:0030490GO:GO:0030688GO:GO:0090502Gramene:AT5G41190.1hmmpanther:PTHR12814hmmpanther:PTHR12814:SF2InterPro:IPR014881
InterPro:IPR017117InterPro:IPR033411KEGG:ath:AT5G41190KO:K11883ncoils:CoilOMA:ANETHAKPfam:PF08772
Pfam:PF17146PhylomeDB:Q9FLL1PIRSF:PIRSF037125Proteomes:UP000006548RefSeq:NP_198935.1SMR:Q9FLL1STRING:3702.AT5G41190.1
SUPFAM:0052201SUPFAM:SSF144206TAIR:AT5G41190UniGene:At.51074UniProt:Q9FLL1
Coordinates (TAIR10) chr5:-:16487628..16490012
Molecular Weight (calculated) 66728.70 Da
IEP (calculated) 5.57
GRAVY (calculated) -0.62
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPKPTSMWS SIVKKDPPSK PPVNDGAPAA ILGMVGNCKS TKGISIAVVD ANAIIEGRQS LTNFADKFVT VPEVLSEIRD PASRRRLAFI PFTIDTMEPS
101: PESLSKVIKF ARATGDLQSL SDVDLKLIAL SYTLEAQVYG TKNLRDVPPP IQTVRVKRLP EKDLPGWGSN VANLEEWEAL ENETEEKSNA NSKILPLKDL
201: NMNIIASDNV SEVGSVVSHT ENHEEDVQEG GKKHRRYPPK KTEIKLEGKM VVEGVDASQG QYDDDDDASD WRPAVSRSTH SKYLRRKARW EHYNALAEQE
301: IQKDQEADKA RHTKEANETH AKDSGKNGED ISSILKDMRL EEESLRALQE ETEETNAEAT LINGEDDIDH DIEVEAEGID VANQALENLE IASEAEDTFE
401: ASSIGDDGSS EQSWSLRALS ESSVACITGD YAMQNVILQM GLRLLAPGGM QIRQLHRWIL KCHACYTVTP EIGRIFCPKC GNGGTLRKVA VTIGANGAII
501: AACKPRITLR GTQYSIPMPK GGREAITKNL ILREDQLPQK LLHPRTKKKA SKPGDEYFVS DDVFLNHHSD RKAPLQPPVR KAMSVFSQKR NPNDNHYSRS
601: MH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)