AT5G27030.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.853 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TOPLESS-related 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TOPLESS-related 3 (TPR3); FUNCTIONS IN: protein binding; INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TOPLESS-related 2 (TAIR:AT3G16830.1). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:9508913..9515263 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125570.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1134 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSLSRELVF LILQFLEEEK FKESVHRLEK ESGFFFNTKY FDEKVLAGEW DDVETYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRQEK AKAVEILVQD 0101: LRVFSTFNEE LYKEITQLLT LQNFRENEQL SKYGDTKTAR GIMLGELKKL IEANPLFRDK LMFPTLRSSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFT 0201: DHTCTLPNGP LAPSAVNQPV TTLTKPAAYP SLGPHVPFPP GPAAANAGAL ASWMAAASGA SAVQAAVVTP ALMPQPQNQM SILKRPRTPP ATPGIVDYQN 0301: PDHELMKRLR PAPSVEEVTY PAPRQQAPWS LEDLPTKAAL ALHQGSTVTS MEFYPMQNTL LLVGSATGEI TLWELAARER LVSRPFKIWD MSNCSHQFQA 0401: LIAKETPISV TRVAWSPDGN FIGKLPVMHC WILIVCCLWS LVSVSYCAGV AFTKHLIQLY AFSGPNDLRQ HTEIDAHVGA VNDLAFANPN RQLCVITCGD 0501: DKLIKVWDVS GRKHFTFEGH DAPVYSICPH YKENIQFIFS TAIDGKIKAW LYDNLGSRVD YDAPGKWCTR MLYSADGTRL FSCGTSKDGD SFLVEWNESE 0601: GSIKRTYKEF QKKLAGVVQF DTSKNHFLAV GEDGQIKFWD MNNINVLTST DAEGGLPALP HLRFNKDGNL LAVTTADNGF KILANPAGFR SLRAMETPAS 0701: ETMRTPVDFK AVPGAPVASV NCKVERGSPV RHSQMLNGVD PSKSRIDDST DKPKSWQLAE ILDPSQCFQA TLPDTAGSST KVVQLLYTNS GAGILALGSN 0801: GIQRLWKWVP NEQNPSGKAT ATVVPQHWQP NSGLLMTNDV SGVNLENAAP CIALSKNDSY VMSAAGGKVS LFNMMTFKVM TTFMPPPPAS TFLAFHPQDN 0901: NVIAIGMEDS TIHIYNVRVD EVKSKLKGHQ KRITGLAFST ALNILVSSGA DAQICFWSID TWEKRKSVAI QMPAGKAANG DTRVQFHVDQ LRILVVHETQ 1001: LAVFDASKME CIRQWIPQDS LSAPISSAVY ACNSQLIYTT FRDGNIGVFD ADSLRLRCRI SPSAYLPQGN QGLSPLVVAA HPQDPNQFAV GLNDGSVKMM 1101: EPTEGEGKWG MIPPSEAINS PSTTSNQTPE QLQR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)