AT5G25520.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPOC domain / Transcription elongation factor S-II protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPOC domain / Transcription elongation factor S-II protein; INVOLVED IN: transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G11430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:8885550..8889484 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109140.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.89 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||||||||||
| Length | 997 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSNMGTELI DLETVKADSD AFGETNLMEL VGSNDPPSLQ HISVSEIEQE PMEISVSGPL SFQFEPEAVS FQSSMLVDTQ SLMPQLQLPY SVERSVAACS 101: NSVTGKRKSP PESTLSGSAT SEKLDASNKR VEPVHHRPWL EQFYSECIQR GHMPPPATLS TKTEHLPTPA KKVRQMEPAS QKSGKQVMNK KQAGLSQGSV 201: KTLNDGNESL RSKMKESLAA ALALVHEHEE SPKEKKNSET EEASVPVADS NEPASACGTS VTVGEDITPA MSTRDESFEQ KNGNGRTLSQ ESSKDTKMNY 301: VNQSDVQKTQ FDEVFPCDDV RFSDSIFTGD ELLQGNGLSW VLEPVSDFGE NETQKSFEDP ELLASKIELE LFKLFGGVNK KYKEKGRSLL FNLKDKNNPE 401: LRESVMSGKI SPERLCNMTA EELASKELSQ WRQAKAEEMA EMVVLRDTDI DVRNLVRKTH KGEFQVEIDP VDSGTVDVSA EITSNSKPRA KAKSSKSSTK 501: ATLKKNDSND KNIKSNQGTS SAVTLPPTEE IDPMQGLSMD DEMKDVGFLP PIVSLDEFME SLNSEPPFGS PHEHPPGKED PASEKSDSKD GSHSKSPSRS 601: PKQSPKEPSE SVSSKTELEK TNVISPKPDA GDQLDGDVSK PENTSLVDSI KEDRIWDGIL QLSSASVVSV TGIFKSGEKA KTSEWPTMVE VKGRVRLSAF 701: GKFVKELPLS RSRVLMVMNV VCKNGISQSQ RDSLIEVAKS YVADQRVGYA EPTSGVELYL CPTLGETLDL LSKIISKDYL DEVKCSEDIG LIGVVVWRRA 801: VVASPGSRHK PGFKRQHSST GTKRSVLAPE NQKSRSVSVT NPSVVNVESM RNHGLVGCDD DDEDMPPGFG PVAAKDDDDL PEFNFNSSSG PVTSSPRPPL 901: QSRSLDQVRE LILKYGNSTG SGSKRPWDGH DDDDDDDIPE WQPQLPPPPP DLSPQFHSGT MARPPAQRPV AGPPSGWKAN QNAPRQQQYS ARRNRGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)