AT5G22320.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 4 (TAIR:AT4G35470.1). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:7388175..7390426 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48866.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.40 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSLTVEQVL KEKKTNDPDS VKELNLGHKA LTDVSCLSKF KNLEKLDLRF NNLTDLQGLK SCVNLKWLSV VENKLQSLNG IEALTKLTVL NAGKNKLKSM 101: NEISSLVNLR ALILNDNEIS SICKLDLLKD LNSLVLSRNP ISEIGDSLSK LKNLSKSCSD LKELRLANNE IKALPAELAV NKRLLNLDVG NNVITQLSGL 201: EVLGTLSCLR NLNIRGNPIS DNDKSAKKVR TLLLPSVNVF NAQPLEKSSR NAKHIRLDTD DETFDAYHNK SAEEEQSKED RKRKKSSKRN KSEEEEVNNE 301: DHKSKKKKSK SNTNVDQVET KKKEEHKEKT IPSNNDDDDD AEKKQKRATP KEELDAIDDA ETSFAEIFSR ENVPKGSEDG IEKKKKSSVQ ETGLVKVIDT 401: KANKKKKKSE KKQSKSVVID LPMEVEIGLG GESKWE |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)