AT5G21170.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 5'-AMP-activated protein kinase beta-2 subunit protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AKINBETA1; FUNCTIONS IN: AMP-activated protein kinase activity; INVOLVED IN: N-terminal protein myristoylation, cellular response to nitrogen levels; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT4G16360.3); Has 674 Blast hits to 666 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 246; Fungi - 149; Plants - 202; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:7205718..7208239 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34874.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.64 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNANGKDED AAAGSGGADV TSSSARSNGG DPSARSRHRR PSSDSMSSSP PGSPARSPSP FLFAPQPTLL FHVTSYNICS PMRHLFHCLG LTCVPNGCIS 101: CRMVPVAPLQ RANAPPPNNI QWNQSQRVFD NPPEQGIPTI ITWNQGGNDV AVEGSWDNWR SRKKLQKSGK DHSILFVLPS GIYHYKVIVD GESKYIPDLP 201: FVADEVGNVC NILDVHNFVP ENPESIVEFE APPSPDHSYG QTLPAAEDYA KEPLAVPPQL HLTLLGTTEE TAIATKPQHV VLNHVFIEQG WTPQSIVALG 301: LTHRFESKYI TVVLYKPLTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)