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AT5G17770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21896887 (2011): mitochondrion
  • PMID:21515817 (2011): endoplasmic reticulum
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:16287169 (2006): extracellular region
  • PMID:15295017 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADH:cytochrome B5 reductase 1
Curator
Summary (TAIR10)
Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.
Computational
Description (TAIR10)
NADH:cytochrome B5 reductase 1 (CBR); FUNCTIONS IN: cytochrome-b5 reductase activity; INVOLVED IN: electron transport chain; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase (TAIR:AT5G20080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G17770-MONOMERBioGrid:16921EC:1.6.2.2eggNOG:COG0543eggNOG:KOG0534EMBL:AB006706EMBL:AB007799
EMBL:AB007800EMBL:AK316787EMBL:AY059822EMBL:AY072482EMBL:AY085728EMBL:CP002688EnsemblPlants:AT5G17770
EnsemblPlants:AT5G17770.1entrez:831645GeneID:831645Genevisible:Q9ZNT1GO:GO:0004128GO:GO:0005741GO:GO:0005783
GO:GO:0005886GO:GO:0009505GO:GO:0016021GO:GO:0022900Gramene:AT5G17770.1hmmpanther:PTHR19370hmmpanther:PTHR19370:SF111
HOGENOM:HOG000175005InParanoid:Q9ZNT1InterPro:IPR001433InterPro:IPR001709InterPro:IPR001834InterPro:IPR008333InterPro:IPR017927
InterPro:IPR017938KEGG:ath:AT5G17770KO:K00326OMA:THNTAIYPaxDb:Q9ZNT1Pfam:PF00175Pfam:PF00970
Pfam:Q9ZNT1Pfscan:PS51384PhylomeDB:Q9ZNT1PIR:T52470PRIDE:Q9ZNT1PRINTS:PR00371PRINTS:PR00406
PRO:PR:Q9ZNT1PROSITE:PS51384ProteinModelPortal:Q9ZNT1Proteomes:UP000006548RefSeq:NP_197279.1SMR:Q9ZNT1STRING:3702.AT5G17770.1
SUPFAM:SSF52343SUPFAM:SSF63380TAIR:AT5G17770tair10-symbols:ATCBRtair10-symbols:CBRtair10-symbols:CBR1TMHMM:TMhelix
UniGene:At.43640UniProt:Q9ZNT1
Coordinates (TAIR10) chr5:-:5864543..5866495
Molecular Weight (calculated) 31492.30 Da
IEP (calculated) 8.59
GRAVY (calculated) -0.19
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MDTEFLRTLD RQILLGVFVA FVAVGAGAAY FLTSSKKRRV CLDPENFKEF KLVKRHQLSH NVAKFVFELP TSTSVLGLPI GQHISCRGKD GQGEDVIKPY
101: TPTTLDSDVG RFELVIKMYP QGRMSHHFRE MRVGDHLAVK GPKGRFKYQP GQFRAFGMLA GGSGITPMFQ VARAILENPT DKTKVHLIYA NVTYDDILLK
201: EELEGLTTNY PEQFKIFYVL NQPPEVWDGG VGFVSKEMIQ THCPAPASDI QILRCGPPPM NKAMAANLEA LGYSPEMQFQ F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)