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AT5G05850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.913
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plant intracellular ras group-related LRR 1
Curator
Summary (TAIR10)
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Computational
Description (TAIR10)
plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AB005237EMBL:AK228975EMBL:AY849571EMBL:BT015883EMBL:BT020196
EMBL:CP002688EnsemblPlants:AT5G05850EnsemblPlants:AT5G05850.1entrez:830470Gene3D:3.80.10.10GeneID:830470Genevisible:Q9FFJ3
GO:GO:0009555GO:GO:0055046Gramene:AT5G05850.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF516HOGENOM:HOG000239210InParanoid:Q9FFJ3
InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675iPTMnet:Q9FFJ3KEGG:ath:AT5G05850ncoils:CoilOMA:EGDLEAC
PaxDb:Q9FFJ3Pfam:PF13855Pfam:Q9FFJ3Pfscan:PS51450PhylomeDB:Q9FFJ3PRIDE:Q9FFJ3PRO:PR:Q9FFJ3
PROSITE:PS51450ProteinModelPortal:Q9FFJ3Proteomes:UP000006548RefSeq:NP_196204.1SMART:SM00369SMR:Q9FFJ3STRING:3702.AT5G05850.1
SUPFAM:SSF52058TAIR:AT5G05850tair10-symbols:PIRL1UniGene:At.32944UniProt:Q9FFJ3
Coordinates (TAIR10) chr5:-:1762691..1764609
Molecular Weight (calculated) 56581.20 Da
IEP (calculated) 4.51
GRAVY (calculated) -0.33
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MATELNPKNF PVLSYVLDRL PSFTAKSSSS SDVEPPPSKS DPSSSSNHSI EIVTQMPHLA HPDVLASMTN ATADVSQTRS VLRTLGPRPD HETVDRARAR
101: LREIDASLSE SFEEIALSPN DIDVAEKEQK RREAVEQEKI WYKSILKLNE LHESYEKLLK EAEERLVRIY ESAEKNAAAV AEEEAAEVEV NEEVVSILQQ
201: AAENPLDRVD LSGRKLKLLP EAFGKIQGLL VLNLYNNQLQ AIPDSIAGLH NLLELDVSTN FLETLPDSIG LLSKLKILNV SCNKLTTLPD SICHCGSLVV
301: LDASYNNLTY LPTNIGFELV KLEKLLIHLN KIRSLPTSIG EMRSLRYLDA HFNELNGLPN SFGLLTNLEY LNLSSNFSDL QDLPASFGDL ISLQELDLSN
401: NQIHSLPDAF GTLVNLTKLN LDQNPLVVPP DEVVKQGVDA VKMYMGKRWV SMLEEEEKMA NMKDEMDQTN TDWLTRTTSK LKTYVTEVSE YLGSNPPRDP
501: YLDQQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)