AT4G35110.4
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Arabidopsis phospholipase-like protein (PEARLI 4) family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Arabidopsis phospholipase-like protein (PEARLI 4) family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase-like, arabidopsis (InterPro:IPR007942); BEST Arabidopsis thaliana protein match is: Arabidopsis phospholipase-like protein (PEARLI 4) family (TAIR:AT2G16900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:16712660..16714316 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44653.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||||||||||
| Length | 398 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDMFCCSIHQ KAMDFNRKAH PDCVYADNPF HECASACLEK IAQGHVKKNT KKQSSRLLSF SGSFGRKKKE SNSQPPTPLS ARPYQNGRGG FANGNSPKVH 101: HSVAPPASVK KKIVSETKNS FTSSSSGDPD DFFNHKPEKK PSQTIPLSSN NLVDQSKVVS PKPGIQEHNG KIGEGGETRL FSFLSLPRSP GKESNDDFSD 201: DDDENNNEIG VELDLESVMS DTFVSVGKYR VRSGSSTILS AVIEKHGDIA QNCKLESDSM RSRYLECLCS LMQELRSTPV GQLSKVKVKE MLAVLKDLES 301: VNIEVAWLRS VLEEFAQSQE DVENEKERHD GLVKAKREEL EAQETDLVRM EKEVVEVKRR IEETRAQMVE IEAERLRMEK MGFKMEKFKG KSFIDELL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)