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AT4G34480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:18998720 (2009): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT2G16230.1); Has 576 Blast hits to 566 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 570; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G34480-MONOMERCAZy:GH17EC:3.2.1.39eggNOG:ENOG410IG6PeggNOG:ENOG410YAGIEMBL:AL023094EMBL:AL161585
EMBL:CP002687EnsemblPlants:AT4G34480EnsemblPlants:AT4G34480.1entrez:829599Gene3D:3.20.20.80GeneID:829599Genevisible:Q9M069
GO:GO:0005576GO:GO:0005618GO:GO:0005975GO:GO:0042973GO:GO:0071555Gramene:AT4G34480.1hmmpanther:PTHR32227
hmmpanther:PTHR32227:SF16HOGENOM:HOG000238220InParanoid:Q9M069InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853
KEGG:ath:AT4G34480OMA:DYACAQVPaxDb:Q9M069Pfam:PF00332Pfam:PF07983Pfam:Q9M069PhylomeDB:Q9M069
PIR:D85406PIR:T05268PRIDE:Q9M069PRO:PR:Q9M069ProteinModelPortal:Q9M069Proteomes:UP000006548RefSeq:NP_195174.6
SMART:SM00768SMR:Q9M069SUPFAM:SSF51445TAIR:AT4G34480UniGene:At.48072UniProt:Q9M069
Coordinates (TAIR10) chr4:-:16481147..16483988
Molecular Weight (calculated) 53124.20 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.02
Length 504 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSISIYFL LIFLSHFPSS HAEPFIGVNY GQVADNLPPP SETVKLLQST SIQKVRLYGA DPAIIKALAG TGVGIVIGAA NGDVPSLASD PNAATQWINS
101: NVLPFYPASK IMLITVGNEI LMSNDPNLVN QLLPAMQNVQ KALEAVSLGG KIKVSTVNSM TVLGSSDPPS SGSFAAGYQT GLKGILQFLS DTGSPFAINP
201: YPFFAYQSDP RPETLAFCLF EPNAGRVDSK TGIKYTNMFD AQVDAVHSAL KSMGFEKVEI VVAETGWASR GDANEVGASV DNAKAYNGNL IAHLRSMVGT
301: PLMPGKPVDT YIFALYDENL KPGPSSERAF GLFKTDLSMV YDVGLAKSSS SSQTPSGKVT SSGWCVPKKG ATNEELQASL DWACGHGIDC GAIQPGGACF
401: EPNNVVSHAA YAMNMYFQKS PKQPTDCDFS KTATVTSQNP SYNNCVYPGG GGGGGGGGGG SKAVMNKYVS SDKVEKKNGA TEPKVSSSLS FLLIFLSLIF
501: HVYM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)