AT4G34060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : demeter-like protein 3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with 5-meC and thymine-DNA glycosylase activity with a preference for CpG and CpHpG sequences. Involved in maintaining methylation marks. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
demeter-like protein 3 (DML3); CONTAINS InterPro DOMAIN/s: DNA glycosylase (InterPro:IPR011257), HhH-GPD domain (InterPro:IPR003265); BEST Arabidopsis thaliana protein match is: demeter-like 1 (TAIR:AT2G36490.1); Has 3859 Blast hits to 3748 proteins in 1288 species: Archae - 200; Bacteria - 2252; Metazoa - 138; Fungi - 63; Plants - 258; Viruses - 0; Other Eukaryotes - 948 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16314004..16319254 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120304.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.63 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1044 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MLTDGSQHTY QNGETKNSKE HERKCDESAH LQDNSQTTHK KKEKKNSKEK HGIKHSESEH LQDDISQRVT GKGRRRNSKG TPKKLRFNRP RILEDGKKPR 0101: NPATTRLRTI SNKRRKKDID SEDEVIPELA TPTKESFPKR RKNEKIKRSV ARTLNFKQEI VLSCLEFDKI CGPIFPRGKK RTTTRRRYDF LCFLLPMPVW 0201: KKQSRRSKRR KNMVRWARIA SSSKLLEETL PLIVSHPTIN GQADASLHID DTLVRHVVSK QTKKSANNVI EHLNRQITYQ KDHGLSSLAD VPLHIEDTLI 0301: KSASSVLSER PIKKTKDIAK LIKDMGRLKI NKKVTTMIKA DKKLVTAKVN LDPETIKEWD VLMVNDSPSR SYDDKETEAK WKKEREIFQT RIDLFINRMH 0401: RLQGNRKFKQ WKGSVVDSVV GVFLTQNTTD YLSSNAFMSV AAKFPVDARE GLSYYIEEPQ DAKSSECIIL SDESISKVED HENTAKRKNE KTGIIEDEIV 0501: DWNNLRRMYT KEGSRPEMHM DSVNWSDVRL SGQNVLETTI KKRGQFRILS ERILKFLNDE VNQNGNIDLE WLRNAPSHLV KRYLLEIEGI GLKSAECVRL 0601: LGLKHHAFPV DTNVGRIAVR LGLVPLEPLP NGVQMHQLFE YPSMDSIQKY LWPRLCKLPQ ETLYELHYQM ITFGKVFCTK TIPNCNACPM KSECKYFASA 0701: YVSSKVLLES PEEKMHEPNT FMNAHSQDVA VDMTSNINLV EECVSSGCSD QAICYKPLVE FPSSPRAEIP ESTDIEDVPF MNLYQSYASV PKIDFDLDAL 0801: KKSVEDALVI SGRMSSSDEE ISKALVIPTP ENACIPIKPP RKMKYYNRLR TEHVVYVLPD NHELLHDFER RKLDDPSPYL LAIWQPGETS SSFVPPKKKC 0901: SSDGSKLCKI KNCSYCWTIR EQNSNIFRGT ILIPCRTAMR GAFPLNGTYF QTNEVFADHE TSLNPIVFRR ELCKGLEKRA LYCGSTVTSI FKLLDTRRIE 1001: LCFWTGFLCL RAFDRKQRDP KELVRRLHTP PDERGPKFMS DDDI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)