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AT4G32800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G11590.1); Has 5524 Blast hits to 5510 proteins in 242 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5517; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNSBeggNOG:ENOG411144IEMBL:AL161582EMBL:AY088918EMBL:BT002924EMBL:BT004343EMBL:CP002687
EnsemblPlants:AT4G32800EnsemblPlants:AT4G32800.1entrez:829416Gene3D:3.30.730.10GeneID:829416Genevisible:Q9M080GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0009873GO:GO:0044212Gramene:AT4G32800.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF27
HOGENOM:HOG000237624InParanoid:Q9M080InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT4G32800OMA:EDLVYMPPaxDb:Q9M080
Pfam:PF00847Pfam:Q9M080Pfscan:PS51032PhylomeDB:Q9M080PIR:T10687PRINTS:PR00367PRO:PR:Q9M080
PROSITE:PS51032ProteinModelPortal:Q9M080Proteomes:UP000006548RefSeq:NP_195006.1SMART:SM00380SMR:Q9M080STRING:3702.AT4G32800.1
SUPFAM:SSF54171TAIR:AT4G32800UniGene:At.31634UniProt:Q9M080
Coordinates (TAIR10) chr4:+:15819812..15820477
Molecular Weight (calculated) 24858.80 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.59
Length 221 amino acids
Sequence (TAIR10)
(BLAST)
001: MADSSSDKEK KENNKQPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTFPT AEMAMRAHDV AAMSIKGTSA ILNFPELSKL LPRPVSLSPR DVRAAATKAA
101: LMDFDTTAFR SDTETSETTT SNKMSESSES NETVSFSSSS WSSVTSIEES TVSDDLDEIV KLPSLGTSLN ESNEFVIFDS LEDLVYMPRW LSGTEEEVFT
201: YNNNDSSLNY SSVFESWKHF P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)