AT4G31700.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ribosomal protein S6 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ribosomal protein S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377); BEST Arabidopsis thaliana protein match is: Ribosomal protein S6e (TAIR:AT5G10360.1); Has 870 Blast hits to 868 proteins in 314 species: Archae - 19; Bacteria - 0; Metazoa - 402; Fungi - 166; Plants - 138; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:15346306..15347075 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 21395.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 12.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.94 | ||||||||||||||||||||||||||||||||||||
| Length | 188 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKQGVLTPGR VRLLLHRGTP CFRGHGRRTG ERRRKSVRGC IVSPDLSVLN LVIVKKGEND LPGLTDTEKP RMRGPKRASK IRKLFNLKKE DDVRTYVNTY 101: RRKFTNKKGK EVSKAPKIQR LVTPLTLQRK RARIADKKKK IAKANSDAAD YQKLLASRLK EQRDRRSESL AKKRSRLSSA AAKPSVTA |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)