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AT4G20910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : double-stranded RNA binding protein-related / DsRBD protein-related
Curator
Summary (TAIR10)
Encodes an enhancer of hua1 and hua2 tha acts to specify reproductive organ identities and to repress A gene function. HEN1 also shares AG's non-homeotic function in controlling floral determinacy. Mutants display corymb-like inflorescences. HEN1 is a methyltransferase that methylates miRNAs and siRNAs on the ribose of the last nucleotide. The 3'-end methylation probably protects the 3' ends of the small RNAs from uridylation.
Computational
Description (TAIR10)
HUA ENHANCER 1 (HEN1); FUNCTIONS IN: RNA methyltransferase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding protein Lupus La (InterPro:IPR006630), Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: double-stranded RNA-binding domain (DsRBD)-containing protein (TAIR:AT4G20920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13130EC:2.1.1.n8eggNOG:ENOG410XSD6eggNOG:KOG1045EMBL:AF060248EMBL:AF327068EMBL:AF411383
EMBL:AL080282EMBL:AL161553EMBL:CP002687EnsemblPlants:AT4G20910EnsemblPlants:AT4G20910.1EnsemblPlants:AT4G20910.2entrez:827839
EvolutionaryTrace:Q9C5Q8Gene3D:3.40.50.150GeneID:827839Genevisible:Q9C5Q8GO:GO:0003723GO:GO:0005634GO:GO:0005737
GO:GO:0008171GO:GO:0008173GO:GO:0009616GO:GO:0009909GO:GO:0010093GO:GO:0010305GO:GO:0010589
GO:GO:0030422GO:GO:0035196GO:GO:0035279GO:GO:0046872Gramene:AT4G20910.1Gramene:AT4G20910.2hmmpanther:PTHR21404
HOGENOM:HOG000084447InterPro:IPR006630InterPro:IPR025714InterPro:IPR026610InterPro:IPR029063iPTMnet:Q9C5Q8KEGG:ath:AT4G20910
OMA:SANCESSPANTHER:PTHR21404PaxDb:Q9C5Q8PDB:3HTXPDBsum:3HTXPfam:PF13847Pfam:Q9C5Q8
Pfscan:PS50961PhylomeDB:Q9C5Q8PIR:T10633PRIDE:Q9C5Q8PRO:PR:Q9C5Q8PROSITE:PS50961ProteinModelPortal:Q9C5Q8
Proteomes:UP000006548RefSeq:NP_001190782.1RefSeq:NP_567616.1SMR:Q9C5Q8STRING:3702.AT4G20910.1SUPFAM:SSF53335TAIR:AT4G20910
tair10-symbols:CRM2tair10-symbols:HEN1UniGene:At.3574UniProt:Q9C5Q8
Coordinates (TAIR10) chr4:-:11186264..11190575
Molecular Weight (calculated) 104460.00 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.41
Length 942 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGGKHTPT PKAIIHQKFG AKASYTVEEV HDSSQSGCLG LAIPQKGPCL YRCHLQLPEF SVVSNVFKKK KDSEQSAAEL ALDKLGIRPQ NDDLTVDEAR
101: DEIVGRIKYI FSDEFLSAEH PLGAHLRAAL RRDGERCGSV PVSVIATVDA KINSRCKIIN PSVESDPFLA ISYVMKAAAK LADYIVASPH GLRRKNAYPS
201: EIVEALATHV SDSLHSREVA AVYIPCIDEE VVELDTLYIS SNRHYLDSIA ERLGLKDGNQ VMISRMFGKA SCGSECRLYS EIPKKYLDNS SDASGTSNED
301: SSHIVKSRNA RASYICGQDI HGDAILASVG YRWKSDDLDY DDVTVNSFYR ICCGMSPNGI YKISRQAVIA AQLPFAFTTK SNWRGPLPRE ILGLFCHQHR
401: LAEPILSSST APVKSLSDIF RSHKKLKVSG VDDANENLSR QKEDTPGLGH GFRCEVKIFT KSQDLVLECS PRKFYEKEND AIQNASLKAL LWFSKFFADL
501: DVDGEQSCDT DDDQDTKSSS PNVFAAPPIL QKEHSSESKN TNVLSAEKRV QSITNGSVVS ICYSLSLAVD PEYSSDGESP REDNESNEEM ESEYSANCES
601: SVELIESNEE IEFEVGTGSM NPHIESEVTQ MTVGEYASFR MTPPDAAEAL ILAVGSDTVR IRSLLSERPC LNYNILLLGV KGPSEERMEA AFFKPPLSKQ
701: RVEYALKHIR ESSASTLVDF GCGSGSLLDS LLDYPTSLQT IIGVDISPKG LARAAKMLHV KLNKEACNVK SATLYDGSIL EFDSRLHDVD IGTCLEVIEH
801: MEEDQACEFG EKVLSLFHPK LLIVSTPNYE FNTILQRSTP ETQEENNSEP QLPKFRNHDH KFEWTREQFN QWASKLGKRH NYSVEFSGVG GSGEVEPGFA
901: SQIAIFRREA SSVENVAESS MQPYKVIWEW KKEDVEKKKT DL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)