suba logo
AT4G13710.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectate lyase family protein (TAIR:AT3G24230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G13710-MONOMERBioCyc:ARA:GQT-882-MONOMERBioGrid:12302CAZy:PL1EC:4.2.2.2eggNOG:COG3866eggNOG:ENOG410IGFP
EMBL:AF424592EMBL:AL035528EMBL:AL161537EMBL:AY142013EMBL:CP002687EMBL:U83622EnsemblPlants:AT4G13710
EnsemblPlants:AT4G13710.1entrez:827005ExpressionAtlas:Q944R1Gene3D:2.160.20.10GeneID:827005Genevisible:Q944R1GO:GO:0030570
GO:GO:0045490GO:GO:0046872hmmpanther:PTHR31683hmmpanther:PTHR31683:SF20HOGENOM:HOG000237948InParanoid:Q944R1InterPro:IPR002022
InterPro:IPR011050InterPro:IPR012334InterPro:IPR018082KEGG:00040+4.2.2.2MINT:MINT-8065964OMA:MIFRNSEPaxDb:Q944R1
Pfam:PF00544Pfam:Q944R1PhylomeDB:Q944R1PIR:H85148PIR:T05240PRIDE:Q944R1PRINTS:PR00807
PRO:PR:Q944R1ProteinModelPortal:Q944R1Proteomes:UP000006548RefSeq:NP_567409.1SMART:SM00656SMR:Q944R1STRING:3702.AT4G13710.1
SUPFAM:SSF51126TAIR:AT4G13710TMHMM:TMhelixUniGene:At.22271UniPathway:UPA00545UniProt:Q944R1
Coordinates (TAIR10) chr4:+:7962550..7966012
Molecular Weight (calculated) 51938.70 Da
IEP (calculated) 8.24
GRAVY (calculated) -0.32
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSQKLIS VCVAVLVVLA LTAMIFRNSE ISLSRKLKTE VIQSSNSSTM AAIRKLKTEE FQSLNSSTMA ATRLDGEPQQ QQHAVADDPD MVADEVAKLV
101: QMSEQNRTAR RKLGFFSCGT GNPIDDCWRC DRNWHKNRKR LADCGIGFGR NAIGGRDGRF YIVTDPTDED VVNPKPGTLR HAVIQEEPLW IVFKRDMVIE
201: LKQELIMNSF KTIDARGSNV HIANGACITI QFITNVIIHG LHIHDCKPTG NAMVRSSPSH FGWRTMADGD AVSIFGSSHI WIDHNSLSHC ADGLVDAVMG
301: STAITVSNNH FTHHNEVMLL GHSDSYTKDK LMQVTIAYNH FGEGLVQRMP RCRHGYFHVV NNDYTHWEMY AIGGSAEPTI NSQGNRYAAP MDRFAKEVTK
401: RVETDASEWK KWNWRSEGDL LLNGAFFRPS GAGASASYGR ASSLAAKPSS MVDTITSTAG ALGCRKGRPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)