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AT4G00490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22318864 (2012): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
FP Images

Arabidopsis cell culture (plastidal marker)

At4g00490-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : beta-amylase 2
Curator
Summary (TAIR10)
Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.
Computational
Description (TAIR10)
beta-amylase 2 (BAM2); FUNCTIONS IN: beta-amylase activity; INVOLVED IN: carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 7 (TAIR:AT2G45880.1); Has 836 Blast hits to 835 proteins in 165 species: Archae - 0; Bacteria - 84; Metazoa - 0; Fungi - 0; Plants - 686; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).
Protein Annotations
CAZy:GH14EC:3.2.1.2eggNOG:ENOG410IECXeggNOG:ENOG410XNXSEMBL:AF058919EMBL:AL161472EMBL:CP002687
EnsemblPlants:AT4G00490EnsemblPlants:AT4G00490.1entrez:827959Gene3D:3.20.20.80GeneID:827959Genevisible:O65258GO:GO:0000272
GO:GO:0009507GO:GO:0009570GO:GO:0016161Gramene:AT4G00490.1gramene_pathway:3.2.1.2gramene_pathway:PWY-842hmmpanther:PTHR31352
hmmpanther:PTHR31352:SF6HOGENOM:HOG000238755InterPro:IPR001371InterPro:IPR001554InterPro:IPR013781InterPro:IPR017853InterPro:IPR018238
KEGG:00500+3.2.1.2KEGG:ath:AT4G00490KO:K01177OMA:RDGFNKIPaxDb:O65258Pfam:O65258Pfam:PF01373
PhylomeDB:O65258PIR:T01213PRIDE:O65258PRINTS:PR00750PRINTS:PR00842PRO:PR:O65258PROSITE:PS00506
ProteinModelPortal:O65258Proteomes:UP000006548RefSeq:NP_191958.3scanprosite:PS00506SMR:O65258STRING:3702.AT4G00490.1SUPFAM:SSF51445
TAIR:AT4G00490tair10-symbols:BAM2tair10-symbols:BMY9UniGene:At.27432UniGene:At.68473UniProt:O65258
Coordinates (TAIR10) chr4:+:222422..224862
Molecular Weight (calculated) 61401.30 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.36
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIRLNHSVI PVSVKLGAPT RVSARSSLPF SVGDWRGVST FSGARPLVLA KVKLRAESTE EDRVPIDDDD DSTDQLVDEE IVHFEERDFA GTACVPVYVM
101: LPLGVIDMNS EVVEPEELLD QLRTLKSVNV DGVMVDCWWG IVESHTPQVY NWSGYKKLFQ MIRELGLKIQ VVMSFHECGG NVGDDVHIQI PEWVREIGQS
201: NPDIYFTDSA GRRNTECLTW GIDKQRVLRG RTALEVYFDY MRSFRVEFDE FFEEKIIPEI EVGLGPCGEL RYPSYPAQFG WKYPGIGEFQ CYDKYLMNSL
301: KEAAEVRGHS FWGRGPDNTE TYNSTPHGTG FFRDGGDYDS YYGRFFLNWY SRVLIDHGDR VLAMANLAFE GTCIAAKLSG IHWWYKTASH AAELTAGFYN
401: SSNRDGYGPI AAMFKKHDAA LNFTCVELRT LDQHEDFPEA LADPEGLVWQ VLNAAWDASI PVASENALPC YDREGYNKIL ENAKPLTDPD GRHLSCFTYL
501: RLNPTLMESQ NFKEFERFLK RMHGEAVPDL GLAPGTQETN PE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)