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AT2G18230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pyrophosphorylase 2
Curator
Summary (TAIR10)
Encodes a protein that might have inorganic pyrophosphatase activity.
Computational
Description (TAIR10)
pyrophosphorylase 2 (PPa2); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 4 (TAIR:AT3G53620.1); Has 5938 Blast hits to 5938 proteins in 1818 species: Archae - 171; Bacteria - 4270; Metazoa - 244; Fungi - 258; Plants - 268; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink).
Protein Annotations
BioGrid:1695EC:3.6.1.1eggNOG:COG0221eggNOG:KOG1626
EMBL:AC006439EMBL:AY048209EMBL:AY088579EMBL:AY091698
EMBL:CP002685EMBL:X57545EnsemblPlants:AT2G18230EnsemblPlants:AT2G18230.1
entrez:816338Gene3D:3.90.80.10GeneID:816338Genevisible:P21216
GO:GO:0000287GO:GO:0004427GO:GO:0005737GO:GO:0006796
Gramene:AT2G18230.1gramene_pathway:3.6.1.1gramene_pathway:PWYQT-4437HAMAP:MF_00209
hmmpanther:PTHR10286hmmpanther:PTHR10286:SF13HOGENOM:HOG000236472InParanoid:P21216
InterPro:IPR008162KEGG:00190+3.6.1.1KEGG:ath:AT2G18230KO:K01507
ncoils:CoilOMA:SEVEYFFPANTHER:PTHR10286PaxDb:P21216
Pfam:P21216Pfam:PF00719PhylomeDB:P21216PIR:H84561
PIR:S13379PRIDE:P21216PRO:PR:P21216PROSITE:PS00387
ProteinModelPortal:P21216Proteomes:UP000006548RefSeq:NP_179415.1scanprosite:PS00387
SMR:P21216STRING:3702.AT2G18230.1SUPFAM:SSF50324TAIR:AT2G18230
tair10-symbols:AtPPa2tair10-symbols:PPa2UniGene:At.22749UniProt:P21216
Coordinates (TAIR10) chr2:-:7932139..7933560
Molecular Weight (calculated) 24672.60 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.35
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEIKDEGSA KGYAFPLRNP NVTLNERNFA AFTHRSAAAH PWHDLEIGPE APTVFNCVVE ISKGGKVKYE LDKNSGLIKV DRVLYSSIVY PHNYGFIPRT
101: ICEDSDPMDV LVLMQEPVLT GSFLRARAIG LMPMIDQGEK DDKIIAVCAD DPEFRHYRDI KELPPHRLAE IRRFFEDYKK NENKKVDVEA FLPAQAAIDA
201: IKDSMDLYAA YIKAGLQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)