AT3G54860.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sec1/munc18-like (SM) proteins superfamily | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATVPS33; CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 45 (TAIR:AT1G77140.1); Has 1433 Blast hits to 1411 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 387; Plants - 135; Viruses - 0; Other Eukaryotes - 299 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:20324286..20329841 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68935.50 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 608 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQIPSLENA PLNLKSIRDK SERELVNLLK DVRGTKCLVI DPKLSGSVSL IIPTSKLKEL GLELRHLTAE PVQTECTKVV YLVRSQLSFM KFIASHIQND 101: IAKAIQRDYY VYFVPRRSVA CEKILEQEKV HNLVTVKEFP LYMVPLDEDV ISFELELSEK DCLVDGDVSS LWHIAKAIHE LEFSFGVISK MRAKGKASVR 201: VADILNRMQV EEPVNSNDVG RPEVDTLILL DREVDMVTPM CSQLTYEGLI DEILHISNGA VEVDSSVMGA QQEGKKMKVP LNSSKYDAWN IYFDFRGLDN 301: DKLFKETRDL NFEVVVQVLR QKAMTMKEDY TEINSTQTVS ELKDFVKKLN SLPEMTRHIH LAQHLTTFTS KQSFNSQLDM EQTLVEAENY DICYEYIEEM 401: IHKQEPLTNV LRLLVLFSVT NSGLPKKQFD YIRMELLHSY GFEHVVTLNN LEKAGLLKKQ EFKSNWLTVK RTLKLIVEDT DTSRPNDIAY VYSGYAPLSI 501: RLIQQAIHSG WRPMEDILKL LPGPHLETKR SGFPSSPSVD SLHGASNGVA DGRRSIVLVV FIGGVTFAEI SALRYLASKE GMAYDLIVAT TKIVNGATLI 601: ETFMEKLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)